ID   PP193_ARATH             Reviewed;         453 AA.
AC   Q8L6Y7; O80909;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   16-DEC-2008, sequence version 2.
DT   03-AUG-2022, entry version 109.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At2g38420, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At2g38420; ORFNames=T19C21.9;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617197; DOI=10.1038/45471;
RA   Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA   Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA   Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA   Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA   Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA   Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA   Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT   "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL   Nature 402:761-768(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 5-453.
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAM98219.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AC004683; AAC28762.1; -; Genomic_DNA.
DR   EMBL; CP002685; AEC09535.1; -; Genomic_DNA.
DR   EMBL; AY140078; AAM98219.1; ALT_INIT; mRNA.
DR   EMBL; BT008752; AAP49514.1; -; mRNA.
DR   PIR; T02503; T02503.
DR   RefSeq; NP_181376.3; NM_129398.4.
DR   AlphaFoldDB; Q8L6Y7; -.
DR   SMR; Q8L6Y7; -.
DR   PaxDb; Q8L6Y7; -.
DR   PRIDE; Q8L6Y7; -.
DR   EnsemblPlants; AT2G38420.1; AT2G38420.1; AT2G38420.
DR   GeneID; 818423; -.
DR   Gramene; AT2G38420.1; AT2G38420.1; AT2G38420.
DR   KEGG; ath:AT2G38420; -.
DR   Araport; AT2G38420; -.
DR   TAIR; locus:2057185; AT2G38420.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_0_1; -.
DR   InParanoid; Q8L6Y7; -.
DR   OMA; YTMVLNG; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q8L6Y7; -.
DR   PRO; PR:Q8L6Y7; -.
DR   Proteomes; UP000006548; Chromosome 2.
DR   ExpressionAtlas; Q8L6Y7; baseline and differential.
DR   Genevisible; Q8L6Y7; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   Pfam; PF13812; PPR_3; 1.
DR   TIGRFAMs; TIGR00756; PPR; 4.
DR   PROSITE; PS51375; PPR; 10.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..77
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           78..453
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At2g38420, mitochondrial"
FT                   /id="PRO_0000356052"
FT   REPEAT          107..141
FT                   /note="PPR 1"
FT   REPEAT          142..177
FT                   /note="PPR 2"
FT   REPEAT          178..212
FT                   /note="PPR 3"
FT   REPEAT          213..249
FT                   /note="PPR 4"
FT   REPEAT          250..284
FT                   /note="PPR 5"
FT   REPEAT          285..319
FT                   /note="PPR 6"
FT   REPEAT          320..354
FT                   /note="PPR 7"
FT   REPEAT          355..389
FT                   /note="PPR 8"
FT   REPEAT          390..424
FT                   /note="PPR 9"
SQ   SEQUENCE   453 AA;  51597 MW;  F45265D6DC5D9F62 CRC64;
     MARSSSWHRM SNFMRKYRKI PHSSFKTKWN ENLKQKYAME ELRSNLLTDS ENASVMRTLL
     SSFQLHNCEP TPQAYRFVIK TLAKSSQLEN ISSVLYHLEV SEKFDTPESI FRDVIAAYGF
     SGRIEEAIEV FFKIPNFRCV PSAYTLNALL LVLVRKRQSL ELVPEILVKA CRMGVRLEES
     TFGILIDALC RIGEVDCATE LVRYMSQDSV IVDPRLYSRL LSSVCKHKDS SCFDVIGYLE
     DLRKTRFSPG LRDYTVVMRF LVEGGRGKEV VSVLNQMKCD RVEPDLVCYT IVLQGVIADE
     DYPKADKLFD ELLLLGLAPD VYTYNVYING LCKQNDIEGA LKMMSSMNKL GSEPNVVTYN
     ILIKALVKAG DLSRAKTLWK EMETNGVNRN SHTFDIMISA YIEVDEVVCA HGLLEEAFNM
     NVFVKSSRIE EVISRLCEKG LMDQAVELLA HLV