PP194_ARATH
ID PP194_ARATH Reviewed; 867 AA.
AC O80958;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g39230, mitochondrial;
DE AltName: Full=Protein LATERAL ORGAN JUNCTION;
DE Flags: Precursor;
GN Name=LOJ; OrderedLocusNames=At2g39230; ORFNames=T16B24.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [4]
RP CHARACTERIZATION.
RX PubMed=16032780; DOI=10.1016/j.gene.2005.03.043;
RA Prasad A.M., Sivanandan C., Resminath R., Thakare D.R., Bhat S.R.,
RA Srinivasan R.;
RT "Cloning and characterization of a pentatricopeptide protein encoding gene
RT (LOJ) that is specifically expressed in lateral organ junctions in
RT Arabidopsis thaliana.";
RL Gene 353:67-79(2005).
CC -!- FUNCTION: Involved in lateral organ development and boundary
CC demarcation.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in lateral organ junctions and shoot
CC apical meristem (SAM).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC004697; AAC28985.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09648.1; -; Genomic_DNA.
DR PIR; T02579; T02579.
DR RefSeq; NP_181456.1; NM_129481.2.
DR AlphaFoldDB; O80958; -.
DR SMR; O80958; -.
DR STRING; 3702.AT2G39230.1; -.
DR PaxDb; O80958; -.
DR PRIDE; O80958; -.
DR ProteomicsDB; 249155; -.
DR EnsemblPlants; AT2G39230.1; AT2G39230.1; AT2G39230.
DR GeneID; 818508; -.
DR Gramene; AT2G39230.1; AT2G39230.1; AT2G39230.
DR KEGG; ath:AT2G39230; -.
DR Araport; AT2G39230; -.
DR TAIR; locus:2056078; AT2G39230.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; O80958; -.
DR OMA; CKNMEME; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O80958; -.
DR PRO; PR:O80958; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O80958; baseline and differential.
DR Genevisible; O80958; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 19.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..49
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 50..867
FT /note="Pentatricopeptide repeat-containing protein
FT At2g39230, mitochondrial"
FT /id="PRO_0000356053"
FT REPEAT 168..202
FT /note="PPR 1"
FT REPEAT 203..237
FT /note="PPR 2"
FT REPEAT 238..272
FT /note="PPR 3"
FT REPEAT 273..307
FT /note="PPR 4"
FT REPEAT 309..343
FT /note="PPR 5"
FT REPEAT 344..378
FT /note="PPR 6"
FT REPEAT 379..413
FT /note="PPR 7"
FT REPEAT 414..444
FT /note="PPR 8"
FT REPEAT 448..482
FT /note="PPR 9"
FT REPEAT 483..517
FT /note="PPR 10"
FT REPEAT 518..552
FT /note="PPR 11"
FT REPEAT 553..588
FT /note="PPR 12"
FT REPEAT 589..623
FT /note="PPR 13"
FT REPEAT 624..658
FT /note="PPR 14"
FT REPEAT 659..693
FT /note="PPR 15"
FT REPEAT 694..728
FT /note="PPR 16"
FT REPEAT 729..763
FT /note="PPR 17"
FT REPEAT 764..798
FT /note="PPR 18"
FT REPEAT 799..833
FT /note="PPR 19"
FT REGION 27..74
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 27..73
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 867 AA; 97669 MW; 49D5B13C9E2DFEA7 CRC64;
MTTFMVSKRF RPPIFLHRFI NPKPISSQTR FLHPPDNQSR DISDSTTETI STLEFPHKTS
VPNHSPLTST SETENHVDDA RVIEVLLGRR NDPVSALQYC NWVKPLHRLC EGGDVFWVLI
HILLSSIHTH DRASNLLVMF VSNNPTLIPN VMVNNLVDSS KRFGFELTPR AFNYLLNAYI
RNKRMDYAVD CFGLMVDRKV VPFVPYVNNV LSSLVRSNLI DEAKEIYNKM VLIGVAGDNV
TTQLLMRASL RERKPEEAVK IFRRVMSRGA EPDGLLFSLA VQAACKTPDL VMALDLLREM
RGKLGVPASQ ETYTSVIVAF VKEGNMEEAV RVMDEMVGFG IPMSVIAATS LVNGYCKGNE
LGKALDLFNR MEEEGLAPDK VMFSVMVEWF CKNMEMEKAI EFYMRMKSVR IAPSSVLVHT
MIQGCLKAES PEAALEIFND SFESWIAHGF MCNKIFLLFC KQGKVDAATS FLKMMEQKGI
EPNVVFYNNM MLAHCRMKNM DLARSIFSEM LEKGLEPNNF TYSILIDGFF KNKDEQNAWD
VINQMNASNF EANEVIYNTI INGLCKVGQT SKAKEMLQNL IKEKRYSMSC TSYNSIIDGF
VKVGDTDSAV ETYREMSENG KSPNVVTFTS LINGFCKSNR MDLALEMTHE MKSMELKLDL
PAYGALIDGF CKKNDMKTAY TLFSELPELG LMPNVSVYNS LISGFRNLGK MDAAIDLYKK
MVNDGISCDL FTYTTMIDGL LKDGNINLAS DLYSELLDLG IVPDEILHMV LVNGLSKKGQ
FLKASKMLEE MKKKDVTPNV LLYSTVIAGH HREGNLNEAF RLHDEMLEKG IVHDDTVFNL
LVSGRVEKPP AASKISSLAS PEMRSSY
