PP195_ARATH
ID PP195_ARATH Reviewed; 836 AA.
AC O80647;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g39620;
GN Name=PCMP-E33; OrderedLocusNames=At2g39620; ORFNames=F12L6.28;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC004218; AAC27851.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09698.1; -; Genomic_DNA.
DR PIR; T00570; T00570.
DR RefSeq; NP_181492.1; NM_129518.2.
DR AlphaFoldDB; O80647; -.
DR SMR; O80647; -.
DR PaxDb; O80647; -.
DR PRIDE; O80647; -.
DR ProteomicsDB; 249156; -.
DR EnsemblPlants; AT2G39620.1; AT2G39620.1; AT2G39620.
DR GeneID; 818545; -.
DR Gramene; AT2G39620.1; AT2G39620.1; AT2G39620.
DR KEGG; ath:AT2G39620; -.
DR Araport; AT2G39620; -.
DR TAIR; locus:2039817; AT2G39620.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; O80647; -.
DR OMA; SDIYAQC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O80647; -.
DR PRO; PR:O80647; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O80647; baseline and differential.
DR Genevisible; O80647; AT.
DR Gene3D; 1.25.40.10; -; 8.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 9.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..836
FT /note="Pentatricopeptide repeat-containing protein
FT At2g39620"
FT /id="PRO_0000356054"
FT REPEAT 1..35
FT /note="PPR 1"
FT REPEAT 36..62
FT /note="PPR 2"
FT REPEAT 63..98
FT /note="PPR 3"
FT REPEAT 99..133
FT /note="PPR 4"
FT REPEAT 134..164
FT /note="PPR 5"
FT REPEAT 165..199
FT /note="PPR 6"
FT REPEAT 200..230
FT /note="PPR 7"
FT REPEAT 233..263
FT /note="PPR 8"
FT REPEAT 264..298
FT /note="PPR 9"
FT REPEAT 299..333
FT /note="PPR 10"
FT REPEAT 334..364
FT /note="PPR 11"
FT REPEAT 365..399
FT /note="PPR 12"
FT REPEAT 400..434
FT /note="PPR 13"
FT REPEAT 435..465
FT /note="PPR 14"
FT REPEAT 466..500
FT /note="PPR 15"
FT REPEAT 501..535
FT /note="PPR 16"
FT REPEAT 536..566
FT /note="PPR 17"
FT REPEAT 568..602
FT /note="PPR 18"
FT REPEAT 603..637
FT /note="PPR 19"
FT REPEAT 638..668
FT /note="PPR 20"
FT REPEAT 669..703
FT /note="PPR 21"
FT REPEAT 704..734
FT /note="PPR 22"
FT REPEAT 740..770
FT /note="PPR 23"
FT REGION 775..836
FT /note="Type E motif; degenerate"
SQ SEQUENCE 836 AA; 92672 MW; 39E95572AC1D99CC CRC64;
MPINYTNLLL MLRECKNFRC LLQVHGSLIV SGLKPHNQLI NAYSLFQRQD LSRVIFDSVR
DPGVVLWNSM IRGYTRAGLH REALGFFGYM SEEKGIDPDK YSFTFALKAC AGSMDFKKGL
RIHDLIAEMG LESDVYIGTA LVEMYCKARD LVSARQVFDK MHVKDVVTWN TMVSGLAQNG
CSSAALLLFH DMRSCCVDID HVSLYNLIPA VSKLEKSDVC RCLHGLVIKK GFIFAFSSGL
IDMYCNCADL YAAESVFEEV WRKDESSWGT MMAAYAHNGF FEEVLELFDL MRNYDVRMNK
VAAASALQAA AYVGDLVKGI AIHDYAVQQG LIGDVSVATS LMSMYSKCGE LEIAEQLFIN
IEDRDVVSWS AMIASYEQAG QHDEAISLFR DMMRIHIKPN AVTLTSVLQG CAGVAASRLG
KSIHCYAIKA DIESELETAT AVISMYAKCG RFSPALKAFE RLPIKDAVAF NALAQGYTQI
GDANKAFDVY KNMKLHGVCP DSRTMVGMLQ TCAFCSDYAR GSCVYGQIIK HGFDSECHVA
HALINMFTKC DALAAAIVLF DKCGFEKSTV SWNIMMNGYL LHGQAEEAVA TFRQMKVEKF
QPNAVTFVNI VRAAAELSAL RVGMSVHSSL IQCGFCSQTP VGNSLVDMYA KCGMIESSEK
CFIEISNKYI VSWNTMLSAY AAHGLASCAV SLFLSMQENE LKPDSVSFLS VLSACRHAGL
VEEGKRIFEE MGERHKIEAE VEHYACMVDL LGKAGLFGEA VEMMRRMRVK TSVGVWGALL
NSSRMHCNLW LSNAALCQLV KLEPLNPSHY SQDRRLGEVN NVSRIKKVPA CSWIEV
