ID   PP196_ARATH             Reviewed;         351 AA.
AC   Q9S733;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   03-AUG-2022, entry version 103.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At2g40240, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At2g40240; ORFNames=T3G21, T7M7.22;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=10207155;
RA   Wang M.L., Belmonte S., Kim U., Dolan M., Morris J.W., Goodman H.M.;
RT   "A cluster of ABA-regulated genes on Arabidopsis thaliana BAC T07M07.";
RL   Genome Res. 9:325-333(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617197; DOI=10.1038/45471;
RA   Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA   Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA   Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA   Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA   Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA   Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA   Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT   "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL   Nature 402:761-768(1999).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [6]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AF085279; AAD25939.1; -; Genomic_DNA.
DR   EMBL; AC007020; AAD25659.1; -; Genomic_DNA.
DR   EMBL; CP002685; AEC09801.1; -; Genomic_DNA.
DR   EMBL; BT004143; AAO42164.1; -; mRNA.
DR   EMBL; BT005688; AAO64108.1; -; mRNA.
DR   EMBL; AK228544; BAF00465.1; -; mRNA.
DR   PIR; A84827; A84827.
DR   RefSeq; NP_181553.1; NM_129582.3.
DR   AlphaFoldDB; Q9S733; -.
DR   SMR; Q9S733; -.
DR   PaxDb; Q9S733; -.
DR   PRIDE; Q9S733; -.
DR   ProteomicsDB; 249157; -.
DR   EnsemblPlants; AT2G40240.1; AT2G40240.1; AT2G40240.
DR   GeneID; 818616; -.
DR   Gramene; AT2G40240.1; AT2G40240.1; AT2G40240.
DR   KEGG; ath:AT2G40240; -.
DR   Araport; AT2G40240; -.
DR   TAIR; locus:2063053; AT2G40240.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_832474_0_0_1; -.
DR   OMA; LEFVMAY; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9S733; -.
DR   PRO; PR:Q9S733; -.
DR   Proteomes; UP000006548; Chromosome 2.
DR   ExpressionAtlas; Q9S733; baseline and differential.
DR   Genevisible; Q9S733; AT.
DR   GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF12854; PPR_1; 1.
DR   TIGRFAMs; TIGR00756; PPR; 2.
DR   PROSITE; PS51375; PPR; 5.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..27
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           28..351
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At2g40240, mitochondrial"
FT                   /id="PRO_0000356055"
FT   REPEAT          106..140
FT                   /note="PPR 1"
FT   REPEAT          141..175
FT                   /note="PPR 2"
FT   REPEAT          176..210
FT                   /note="PPR 3"
FT   REPEAT          211..245
FT                   /note="PPR 4"
FT   REPEAT          246..280
FT                   /note="PPR 5"
FT   REPEAT          281..315
FT                   /note="PPR 6"
SQ   SEQUENCE   351 AA;  39881 MW;  DDA691A2DAB95869 CRC64;
     MSLLRRRFVK QSVNCITFLQ ILAERSFSTV KIPPGRRKTT EFDKLINEAG SSGDFETVRR
     LLNNRIVLGS FNTSDTFKFL TNTASYSSYL EDLRRVLPQI DGGFSRKNAY DILISRLCKL
     GRIDDALIVI GDMSNGRLGL TPSTYHPILC SLTRKYKIEE AWRVVESMRS KSVSMDVTAY
     NYFLTSHCYD GELESASEVM RKIEEDGNSP DSRSYDALVL GACRAGKVEA AMAILRRMEE
     DGVTVLYSTH AHVITGLVEG GYYALGLEFV MAYAGKDLRL DSESFGFLAG KLVKRKRYEE
     AMIVVKEMVM RGLRMGDELR QFYEGNVRYD DDDEDSLVQS ERECYIEQKL N