PP197_ARATH
ID PP197_ARATH Reviewed; 860 AA.
AC Q7XJN6;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g40720;
GN Name=PCMP-E26; OrderedLocusNames=At2g40720; ORFNames=T7D17.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; CP002685; AEC09868.1; -; Genomic_DNA.
DR PIR; A84833; A84833.
DR RefSeq; NP_181604.1; NM_129634.2.
DR AlphaFoldDB; Q7XJN6; -.
DR SMR; Q7XJN6; -.
DR STRING; 3702.AT2G40720.1; -.
DR PaxDb; Q7XJN6; -.
DR PRIDE; Q7XJN6; -.
DR ProteomicsDB; 249158; -.
DR EnsemblPlants; AT2G40720.1; AT2G40720.1; AT2G40720.
DR GeneID; 818667; -.
DR Gramene; AT2G40720.1; AT2G40720.1; AT2G40720.
DR KEGG; ath:AT2G40720; -.
DR Araport; AT2G40720; -.
DR TAIR; locus:2064828; AT2G40720.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_0_1; -.
DR InParanoid; Q7XJN6; -.
DR OMA; LISCSMT; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q7XJN6; -.
DR PRO; PR:Q7XJN6; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q7XJN6; baseline and differential.
DR Genevisible; Q7XJN6; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 3.
DR Pfam; PF01535; PPR; 10.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 18.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..860
FT /note="Pentatricopeptide repeat-containing protein
FT At2g40720"
FT /id="PRO_0000356056"
FT REPEAT 59..93
FT /note="PPR 1"
FT REPEAT 94..124
FT /note="PPR 2"
FT REPEAT 132..166
FT /note="PPR 3"
FT REPEAT 167..203
FT /note="PPR 4"
FT REPEAT 204..234
FT /note="PPR 5"
FT REPEAT 236..270
FT /note="PPR 6"
FT REPEAT 271..305
FT /note="PPR 7"
FT REPEAT 306..340
FT /note="PPR 8"
FT REPEAT 341..371
FT /note="PPR 9"
FT REPEAT 372..406
FT /note="PPR 10"
FT REPEAT 407..437
FT /note="PPR 11"
FT REPEAT 438..472
FT /note="PPR 12"
FT REPEAT 475..509
FT /note="PPR 13"
FT REPEAT 510..540
FT /note="PPR 14"
FT REPEAT 541..575
FT /note="PPR 15"
FT REPEAT 576..610
FT /note="PPR 16"
FT REPEAT 611..641
FT /note="PPR 17"
FT REPEAT 642..676
FT /note="PPR 18"
FT REPEAT 677..707
FT /note="PPR 19"
FT REPEAT 713..743
FT /note="PPR 20"
FT REGION 748..823
FT /note="Type E motif"
FT REGION 824..854
FT /note="Type E(+) motif"
SQ SEQUENCE 860 AA; 95393 MW; A79159C501D77976 CRC64;
MRFKLHDVHI RRGLCCVADS YISPASINSG IRALIQKGEY LQALHLYSKH DGSSPFWTSV
FTFPSLLKAC SALTNLSYGK TIHGSVVVLG WRYDPFIATS LVNMYVKCGF LDYAVQVFDG
WSQSQSGVSA RDVTVWNSMI DGYFKFRRFK EGVGCFRRML VFGVRPDAFS LSIVVSVMCK
EGNFRREEGK QIHGFMLRNS LDTDSFLKTA LIDMYFKFGL SIDAWRVFVE IEDKSNVVLW
NVMIVGFGGS GICESSLDLY MLAKNNSVKL VSTSFTGALG ACSQSENSGF GRQIHCDVVK
MGLHNDPYVC TSLLSMYSKC GMVGEAETVF SCVVDKRLEI WNAMVAAYAE NDYGYSALDL
FGFMRQKSVL PDSFTLSNVI SCCSVLGLYN YGKSVHAELF KRPIQSTSTI ESALLTLYSK
CGCDPDAYLV FKSMEEKDMV AWGSLISGLC KNGKFKEALK VFGDMKDDDD SLKPDSDIMT
SVTNACAGLE ALRFGLQVHG SMIKTGLVLN VFVGSSLIDL YSKCGLPEMA LKVFTSMSTE
NMVAWNSMIS CYSRNNLPEL SIDLFNLMLS QGIFPDSVSI TSVLVAISST ASLLKGKSLH
GYTLRLGIPS DTHLKNALID MYVKCGFSKY AENIFKKMQH KSLITWNLMI YGYGSHGDCI
TALSLFDEMK KAGESPDDVT FLSLISACNH SGFVEEGKNI FEFMKQDYGI EPNMEHYANM
VDLLGRAGLL EEAYSFIKAM PIEADSSIWL CLLSASRTHH NVELGILSAE KLLRMEPERG
STYVQLINLY MEAGLKNEAA KLLGLMKEKG LHKQPGCSWI EVSDRTNVFF SGGSSSPMKA
EIFNVLNRLK SNMVDEDKAT
