PP198_ARATH
ID PP198_ARATH Reviewed; 650 AA.
AC Q8S9M4; F4IJ39; O80676;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g41080;
GN Name=PCMP-H29; OrderedLocusNames=At2g41080; ORFNames=T3K9.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 85-650.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD12003.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AAL69458.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC004261; AAD12003.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC09925.2; -; Genomic_DNA.
DR EMBL; AY074642; AAL69458.1; ALT_INIT; mRNA.
DR PIR; T02111; T02111.
DR RefSeq; NP_850342.2; NM_180011.2.
DR AlphaFoldDB; Q8S9M4; -.
DR SMR; Q8S9M4; -.
DR STRING; 3702.AT2G41080.1; -.
DR PaxDb; Q8S9M4; -.
DR PRIDE; Q8S9M4; -.
DR ProteomicsDB; 249159; -.
DR EnsemblPlants; AT2G41080.1; AT2G41080.1; AT2G41080.
DR GeneID; 818707; -.
DR Gramene; AT2G41080.1; AT2G41080.1; AT2G41080.
DR KEGG; ath:AT2G41080; -.
DR Araport; AT2G41080; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q8S9M4; -.
DR OMA; DRFTANH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8S9M4; -.
DR PRO; PR:Q8S9M4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8S9M4; baseline and differential.
DR Genevisible; Q8S9M4; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..650
FT /note="Pentatricopeptide repeat-containing protein
FT At2g41080"
FT /id="PRO_0000356057"
FT REPEAT 43..77
FT /note="PPR 1"
FT REPEAT 78..112
FT /note="PPR 2"
FT REPEAT 114..139
FT /note="PPR 3"
FT REPEAT 140..174
FT /note="PPR 4"
FT REPEAT 175..209
FT /note="PPR 5"
FT REPEAT 210..240
FT /note="PPR 6"
FT REPEAT 241..275
FT /note="PPR 7"
FT REPEAT 276..310
FT /note="PPR 8"
FT REPEAT 311..341
FT /note="PPR 9"
FT REPEAT 342..372
FT /note="PPR 10"
FT REPEAT 378..413
FT /note="PPR 11"
FT REPEAT 414..444
FT /note="PPR 12"
FT REGION 449..524
FT /note="Type E motif"
FT REGION 525..555
FT /note="Type E(+) motif"
FT REGION 556..650
FT /note="Type DYW motif"
SQ SEQUENCE 650 AA; 72816 MW; BAAFE3773078A797 CRC64;
MRCSVSSVVR PLSVDPATAI ATLCSKGNLR EAFQRFRLNI FTNTSLFTPF IQSCTTRQSL
PSGKQLHCLL VVSGFSSDKF ICNHLMSMYS KLGDFPSAVA VYGRMRKKNY MSSNILINGY
VRAGDLVNAR KVFDEMPDRK LTTWNAMIAG LIQFEFNEEG LSLFREMHGL GFSPDEYTLG
SVFSGSAGLR SVSIGQQIHG YTIKYGLELD LVVNSSLAHM YMRNGKLQDG EIVIRSMPVR
NLVAWNTLIM GNAQNGCPET VLYLYKMMKI SGCRPNKITF VTVLSSCSDL AIRGQGQQIH
AEAIKIGASS VVAVVSSLIS MYSKCGCLGD AAKAFSERED EDEVMWSSMI SAYGFHGQGD
EAIELFNTMA EQTNMEINEV AFLNLLYACS HSGLKDKGLE LFDMMVEKYG FKPGLKHYTC
VVDLLGRAGC LDQAEAIIRS MPIKTDIVIW KTLLSACNIH KNAEMAQRVF KEILQIDPND
SACYVLLANV HASAKRWRDV SEVRKSMRDK NVKKEAGISW FEHKGEVHQF KMGDRSQSKS
KEIYSYLKEL TLEMKLKGYK PDTASVLHDM DEEEKESDLV QHSEKLAVAF ALMILPEGAP
IRIIKNLRVC SDCHVAFKYI SVIKNREITL RDGSRFHHFI NGKCSCGDYW
