PP200_ARATH
ID PP200_ARATH Reviewed; 559 AA.
AC Q9SJG6;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g42920, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-E75; OrderedLocusNames=At2g42920; ORFNames=F23E6.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006580; AAM15291.1; -; Genomic_DNA.
DR EMBL; AC006931; AAD21717.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10187.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM63136.1; -; Genomic_DNA.
DR EMBL; AK229283; BAF01146.1; -; mRNA.
DR PIR; H84859; H84859.
DR RefSeq; NP_001325245.1; NM_001337000.1.
DR RefSeq; NP_181820.1; NM_129853.6.
DR AlphaFoldDB; Q9SJG6; -.
DR SMR; Q9SJG6; -.
DR STRING; 3702.AT2G42920.1; -.
DR PaxDb; Q9SJG6; -.
DR PRIDE; Q9SJG6; -.
DR EnsemblPlants; AT2G42920.1; AT2G42920.1; AT2G42920.
DR EnsemblPlants; AT2G42920.2; AT2G42920.2; AT2G42920.
DR GeneID; 818893; -.
DR Gramene; AT2G42920.1; AT2G42920.1; AT2G42920.
DR Gramene; AT2G42920.2; AT2G42920.2; AT2G42920.
DR KEGG; ath:AT2G42920; -.
DR Araport; AT2G42920; -.
DR TAIR; locus:2045580; AT2G42920.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9SJG6; -.
DR OMA; AYLVFTQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SJG6; -.
DR PRO; PR:Q9SJG6; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SJG6; baseline and differential.
DR Genevisible; Q9SJG6; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..14
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 15..559
FT /note="Pentatricopeptide repeat-containing protein
FT At2g42920, chloroplastic"
FT /id="PRO_0000356059"
FT REPEAT 88..122
FT /note="PPR 1"
FT REPEAT 125..159
FT /note="PPR 2"
FT REPEAT 160..190
FT /note="PPR 3"
FT REPEAT 191..221
FT /note="PPR 4"
FT REPEAT 222..256
FT /note="PPR 5"
FT REPEAT 257..291
FT /note="PPR 6"
FT REPEAT 292..322
FT /note="PPR 7"
FT REPEAT 323..357
FT /note="PPR 8"
FT REPEAT 358..388
FT /note="PPR 9"
FT REPEAT 394..424
FT /note="PPR 10"
FT REGION 429..504
FT /note="Type E motif"
FT REGION 505..535
FT /note="Type E(+) motif"
SQ SEQUENCE 559 AA; 62656 MW; 26EA37EA8F71CE09 CRC64;
MSPTILSFSG VTVPAMPSSG SLSGNTYLRL IDTQCSTMRE LKQIHASLIK TGLISDTVTA
SRVLAFCCAS PSDMNYAYLV FTRINHKNPF VWNTIIRGFS RSSFPEMAIS IFIDMLCSSP
SVKPQRLTYP SVFKAYGRLG QARDGRQLHG MVIKEGLEDD SFIRNTMLHM YVTCGCLIEA
WRIFLGMIGF DVVAWNSMIM GFAKCGLIDQ AQNLFDEMPQ RNGVSWNSMI SGFVRNGRFK
DALDMFREMQ EKDVKPDGFT MVSLLNACAY LGASEQGRWI HEYIVRNRFE LNSIVVTALI
DMYCKCGCIE EGLNVFECAP KKQLSCWNSM ILGLANNGFE ERAMDLFSEL ERSGLEPDSV
SFIGVLTACA HSGEVHRADE FFRLMKEKYM IEPSIKHYTL MVNVLGGAGL LEEAEALIKN
MPVEEDTVIW SSLLSACRKI GNVEMAKRAA KCLKKLDPDE TCGYVLLSNA YASYGLFEEA
VEQRLLMKER QMEKEVGCSS IEVDFEVHEF ISCGGTHPKS AEIYSLLDIL NWDVSTIKSG
FAELFDATTR IGFTYLAEK
