PP201_ARATH
ID PP201_ARATH Reviewed; 555 AA.
AC Q1PEU4; O22163;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 25-MAY-2022, entry version 93.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g44880;
GN Name=PCMP-E9; OrderedLocusNames=At2g44880; ORFNames=T13E15.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002388; AAC31836.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10479.1; -; Genomic_DNA.
DR EMBL; DQ446623; ABE65907.1; -; mRNA.
DR PIR; T00405; T00405.
DR RefSeq; NP_182015.1; NM_130052.2.
DR AlphaFoldDB; Q1PEU4; -.
DR SMR; Q1PEU4; -.
DR STRING; 3702.AT2G44880.1; -.
DR PaxDb; Q1PEU4; -.
DR PRIDE; Q1PEU4; -.
DR EnsemblPlants; AT2G44880.1; AT2G44880.1; AT2G44880.
DR GeneID; 819097; -.
DR Gramene; AT2G44880.1; AT2G44880.1; AT2G44880.
DR KEGG; ath:AT2G44880; -.
DR Araport; AT2G44880; -.
DR TAIR; locus:2054966; AT2G44880.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q1PEU4; -.
DR OMA; HAFMLRN; -.
DR PhylomeDB; Q1PEU4; -.
DR PRO; PR:Q1PEU4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q1PEU4; baseline and differential.
DR Genevisible; Q1PEU4; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..555
FT /note="Pentatricopeptide repeat-containing protein
FT At2g44880"
FT /id="PRO_0000356060"
FT REPEAT 41..75
FT /note="PPR 1"
FT REPEAT 77..111
FT /note="PPR 2"
FT REPEAT 112..142
FT /note="PPR 3"
FT REPEAT 143..173
FT /note="PPR 4"
FT REPEAT 175..205
FT /note="PPR 5"
FT REPEAT 206..240
FT /note="PPR 6"
FT REPEAT 241..267
FT /note="PPR 7"
FT REPEAT 273..307
FT /note="PPR 8"
FT REPEAT 308..342
FT /note="PPR 9"
FT REPEAT 343..370
FT /note="PPR 10"
FT REPEAT 373..407
FT /note="PPR 11"
FT REPEAT 408..438
FT /note="PPR 12"
FT REGION 443..518
FT /note="Type E motif"
FT REGION 519..549
FT /note="Type E(+) motif"
FT CONFLICT 259
FT /note="R -> T (in Ref. 3; ABE65907)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 555 AA; 63260 MW; 6F02A5531A31B31E CRC64;
MLRHAIETNV QIFTKFLVIS ASAVGIGYAR KLFDQRPQRD DSFLSNSMIK AYLETRQYPD
SFALYRDLRK ETCFAPDNFT FTTLTKSCSL SMCVYQGLQL HSQIWRFGFC ADMYVSTGVV
DMYAKFGKMG CARNAFDEMP HRSEVSWTAL ISGYIRCGEL DLASKLFDQM PHVKDVVIYN
AMMDGFVKSG DMTSARRLFD EMTHKTVITW TTMIHGYCNI KDIDAARKLF DAMPERNLVS
WNTMIGGYCQ NKQPQEGIRL FQEMQATTSL DPDDVTILSV LPAISDTGAL SLGEWCHCFV
QRKKLDKKVK VCTAILDMYS KCGEIEKAKR IFDEMPEKQV ASWNAMIHGY ALNGNARAAL
DLFVTMMIEE KPDEITMLAV ITACNHGGLV EEGRKWFHVM REMGLNAKIE HYGCMVDLLG
RAGSLKEAED LITNMPFEPN GIILSSFLSA CGQYKDIERA ERILKKAVEL EPQNDGNYVL
LRNLYAADKR WDDFGMVKNV MRKNQAKKEV GCSLIEINYI VSEFISGDTT HPHRRSIHLV
LGDLLMHMNE EKYNW
