PP204_ARATH
ID PP204_ARATH Reviewed; 481 AA.
AC Q9ZU88; Q8L483;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At2g48000;
GN OrderedLocusNames=At2g48000; ORFNames=T9J23.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 7-481, AND NUCLEOTIDE SEQUENCE
RP [LARGE SCALE MRNA] OF 115-481.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM20584.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006072; AAD13704.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10922.1; -; Genomic_DNA.
DR EMBL; AY099733; AAM20584.1; ALT_INIT; mRNA.
DR EMBL; AY128908; AAM91308.1; -; mRNA.
DR PIR; B84922; B84922.
DR RefSeq; NP_850482.3; NM_180151.4.
DR AlphaFoldDB; Q9ZU88; -.
DR SMR; Q9ZU88; -.
DR PaxDb; Q9ZU88; -.
DR PRIDE; Q9ZU88; -.
DR EnsemblPlants; AT2G48000.1; AT2G48000.1; AT2G48000.
DR GeneID; 819412; -.
DR Gramene; AT2G48000.1; AT2G48000.1; AT2G48000.
DR KEGG; ath:AT2G48000; -.
DR Araport; AT2G48000; -.
DR TAIR; locus:2066379; AT2G48000.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_034990_0_0_1; -.
DR InParanoid; Q9ZU88; -.
DR OMA; KMSRSMF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZU88; -.
DR PRO; PR:Q9ZU88; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZU88; baseline and differential.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR044179; PPR5-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR47874; PTHR47874; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..481
FT /note="Pentatricopeptide repeat-containing protein
FT At2g48000"
FT /id="PRO_0000356063"
FT REPEAT 147..181
FT /note="PPR 1"
FT REPEAT 187..221
FT /note="PPR 2"
FT REPEAT 222..256
FT /note="PPR 3"
FT REPEAT 257..287
FT /note="PPR 4"
FT REPEAT 292..324
FT /note="PPR 5"
FT REPEAT 328..362
FT /note="PPR 6"
FT REPEAT 364..398
FT /note="PPR 7"
FT REPEAT 399..433
FT /note="PPR 8"
FT REPEAT 434..469
FT /note="PPR 9"
SQ SEQUENCE 481 AA; 55040 MW; B7199CAD2A6EEB40 CRC64;
MKKRMWRISL ISQISDLLCL SRGSSSTLKT LTPFCFTLSR SPFHQSGGDD DASGLKNQLL
RFRNDSGKVA SVLERNKIQG AAFVELLRQL RPWPVLSQLV FDWRRNKALC DGLPMTADEY
AKGITISGRL KNVDLALSLF HESANKTTSV YNALMGAYLC NGLSHHCEQL FLDFNSQQDG
PSSSTPSVST YNILISLYGR LIMVERMESV FLQLQQLNIL PDSSTYNNLI AGYIYAWDWD
KMEATFHSMK NGLVKPTLAT YLLMLRGYAN SGNLLRMEDM YQAVKRHVDR NEIKLIESMI
CAYYRSCHKD RIRKIKTLSK LIPKKSYKPW LYLLLMQVYA KDDNLHAMEN FIDQAITKGL
QIETDGIMRS IVASYFRCNA VDKLAKFVQR ANSAGWKMSR SMFHGLMIMY GSQKRFKEME
NVLSEMESFK ISRSKKTLCI LLRVYAATHG QEHKVNQVAG MMLKHGHDFQ RPEASKRVMG
K
