PP206_ARATH
ID PP206_ARATH Reviewed; 825 AA.
AC Q9S7F4;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At2g01510;
GN Name=PCMP-H36; OrderedLocusNames=At3g02010; ORFNames=F1C9.21, F28J7.34;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC010797; AAF03451.1; -; Genomic_DNA.
DR EMBL; AC011664; AAF14834.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE73749.1; -; Genomic_DNA.
DR RefSeq; NP_186850.1; NM_111067.2.
DR AlphaFoldDB; Q9S7F4; -.
DR SMR; Q9S7F4; -.
DR PaxDb; Q9S7F4; -.
DR PRIDE; Q9S7F4; -.
DR ProteomicsDB; 249167; -.
DR EnsemblPlants; AT3G02010.1; AT3G02010.1; AT3G02010.
DR GeneID; 821085; -.
DR Gramene; AT3G02010.1; AT3G02010.1; AT3G02010.
DR KEGG; ath:AT3G02010; -.
DR Araport; AT3G02010; -.
DR TAIR; locus:2078653; AT3G02010.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9S7F4; -.
DR OMA; SWVEIKH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9S7F4; -.
DR PRO; PR:Q9S7F4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9S7F4; differential.
DR Genevisible; Q9S7F4; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..825
FT /note="Putative pentatricopeptide repeat-containing protein
FT At2g01510"
FT /id="PRO_0000356065"
FT REPEAT 47..77
FT /note="PPR 1"
FT REPEAT 78..108
FT /note="PPR 2"
FT REPEAT 109..143
FT /note="PPR 3"
FT REPEAT 146..180
FT /note="PPR 4"
FT REPEAT 183..213
FT /note="PPR 5"
FT REPEAT 214..248
FT /note="PPR 6"
FT REPEAT 249..283
FT /note="PPR 7"
FT REPEAT 284..314
FT /note="PPR 8"
FT REPEAT 315..349
FT /note="PPR 9"
FT REPEAT 350..384
FT /note="PPR 10"
FT REPEAT 385..415
FT /note="PPR 11"
FT REPEAT 416..450
FT /note="PPR 12"
FT REPEAT 451..485
FT /note="PPR 13"
FT REPEAT 486..516
FT /note="PPR 14"
FT REPEAT 517..551
FT /note="PPR 15"
FT REPEAT 552..587
FT /note="PPR 16"
FT REPEAT 588..618
FT /note="PPR 17"
FT REGION 623..699
FT /note="Type E motif"
FT REGION 700..730
FT /note="Type E(+) motif"
FT REGION 731..825
FT /note="Type DYW motif"
SQ SEQUENCE 825 AA; 92376 MW; 9A23BECA9674682B CRC64;
MKLYCNSNEV RSRTLATLRQ LRQPSPATFL DTRRVDARII KTGFDTDTCR SNFIVEDLLR
RGQVSAARKV YDEMPHKNTV STNTMISGHV KTGDVSSARD LFDAMPDRTV VTWTILMGWY
ARNSHFDEAF KLFRQMCRSS SCTLPDHVTF TTLLPGCNDA VPQNAVGQVH AFAVKLGFDT
NPFLTVSNVL LKSYCEVRRL DLACVLFEEI PEKDSVTFNT LITGYEKDGL YTESIHLFLK
MRQSGHQPSD FTFSGVLKAV VGLHDFALGQ QLHALSVTTG FSRDASVGNQ ILDFYSKHDR
VLETRMLFDE MPELDFVSYN VVISSYSQAD QYEASLHFFR EMQCMGFDRR NFPFATMLSI
AANLSSLQMG RQLHCQALLA TADSILHVGN SLVDMYAKCE MFEEAELIFK SLPQRTTVSW
TALISGYVQK GLHGAGLKLF TKMRGSNLRA DQSTFATVLK ASASFASLLL GKQLHAFIIR
SGNLENVFSG SGLVDMYAKC GSIKDAVQVF EEMPDRNAVS WNALISAHAD NGDGEAAIGA
FAKMIESGLQ PDSVSILGVL TACSHCGFVE QGTEYFQAMS PIYGITPKKK HYACMLDLLG
RNGRFAEAEK LMDEMPFEPD EIMWSSVLNA CRIHKNQSLA ERAAEKLFSM EKLRDAAAYV
SMSNIYAAAG EWEKVRDVKK AMRERGIKKV PAYSWVEVNH KIHVFSSNDQ THPNGDEIVR
KINELTAEIE REGYKPDTSS VVQDVDEQMK IESLKYHSER LAVAFALIST PEGCPIVVMK
NLRACRDCHA AIKLISKIVK REITVRDTSR FHHFSEGVCS CGDYW
