PP208_ARATH
ID PP208_ARATH Reviewed; 665 AA.
AC Q9M891;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 110.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g02490, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g02490; ORFNames=F16B3.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC021640; AAF32456.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE73817.1; -; Genomic_DNA.
DR EMBL; BT015365; AAU05488.1; -; mRNA.
DR EMBL; BT020339; AAV85694.1; -; mRNA.
DR RefSeq; NP_186898.1; NM_111116.4.
DR AlphaFoldDB; Q9M891; -.
DR SMR; Q9M891; -.
DR BioGRID; 5897; 1.
DR STRING; 3702.AT3G02490.1; -.
DR PaxDb; Q9M891; -.
DR PRIDE; Q9M891; -.
DR ProteomicsDB; 249169; -.
DR EnsemblPlants; AT3G02490.1; AT3G02490.1; AT3G02490.
DR GeneID; 820563; -.
DR Gramene; AT3G02490.1; AT3G02490.1; AT3G02490.
DR KEGG; ath:AT3G02490; -.
DR Araport; AT3G02490; -.
DR TAIR; locus:2076854; AT3G02490.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_022294_0_0_1; -.
DR InParanoid; Q9M891; -.
DR OMA; RFCKRKM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M891; -.
DR PRO; PR:Q9M891; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M891; baseline and differential.
DR Genevisible; Q9M891; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0008380; P:RNA splicing; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR044578; BIR6-like.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR47003; PTHR47003; 1.
DR Pfam; PF01535; PPR; 2.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..37
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 38..665
FT /note="Pentatricopeptide repeat-containing protein
FT At3g02490, mitochondrial"
FT /id="PRO_0000356067"
FT REPEAT 280..314
FT /note="PPR 1"
FT REPEAT 315..349
FT /note="PPR 2"
FT REPEAT 352..388
FT /note="PPR 3"
FT REPEAT 389..423
FT /note="PPR 4"
FT REPEAT 424..458
FT /note="PPR 5"
FT REPEAT 459..493
FT /note="PPR 6"
FT REPEAT 495..530
FT /note="PPR 7"
FT REPEAT 536..570
FT /note="PPR 8"
SQ SEQUENCE 665 AA; 75706 MW; 3CA612EF9118BB73 CRC64;
MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL
ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE LDSNDVVISH ELALRVLREL
ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN
VRDRVGDKFK KDGLENDLER LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD
LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL
KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL RSVDRFGQSN EVLKAMNEGG
YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS
ECFKKMIGKE GVSYAGYAFE KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR
NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP
AQIEA
