PP210_ARATH
ID PP210_ARATH Reviewed; 882 AA.
AC Q9SS60;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 122.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g03580;
GN Name=PCMP-H23; OrderedLocusNames=At3g03580; ORFNames=T12J13.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009327; AAF03474.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE73959.1; -; Genomic_DNA.
DR EMBL; BT004278; AAO42278.1; -; mRNA.
DR EMBL; BT006153; AAP04138.1; -; mRNA.
DR RefSeq; NP_187008.1; NM_111229.3.
DR AlphaFoldDB; Q9SS60; -.
DR SMR; Q9SS60; -.
DR STRING; 3702.AT3G03580.1; -.
DR PaxDb; Q9SS60; -.
DR PRIDE; Q9SS60; -.
DR ProteomicsDB; 249088; -.
DR EnsemblPlants; AT3G03580.1; AT3G03580.1; AT3G03580.
DR GeneID; 821229; -.
DR Gramene; AT3G03580.1; AT3G03580.1; AT3G03580.
DR KEGG; ath:AT3G03580; -.
DR Araport; AT3G03580; -.
DR TAIR; locus:2096414; AT3G03580.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9SS60; -.
DR OMA; GMYGEGK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SS60; -.
DR PRO; PR:Q9SS60; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SS60; baseline and differential.
DR Genevisible; Q9SS60; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..882
FT /note="Pentatricopeptide repeat-containing protein
FT At3g03580"
FT /id="PRO_0000356069"
FT REPEAT 3..37
FT /note="PPR 1"
FT REPEAT 38..68
FT /note="PPR 2"
FT REPEAT 70..104
FT /note="PPR 3"
FT REPEAT 105..139
FT /note="PPR 4"
FT REPEAT 140..170
FT /note="PPR 5"
FT REPEAT 171..205
FT /note="PPR 6"
FT REPEAT 206..240
FT /note="PPR 7"
FT REPEAT 241..271
FT /note="PPR 8"
FT REPEAT 272..307
FT /note="PPR 9"
FT REPEAT 309..340
FT /note="PPR 10"
FT REPEAT 341..371
FT /note="PPR 11"
FT REPEAT 372..406
FT /note="PPR 12"
FT REPEAT 407..441
FT /note="PPR 13"
FT REPEAT 442..472
FT /note="PPR 14"
FT REPEAT 473..507
FT /note="PPR 15"
FT REPEAT 508..542
FT /note="PPR 16"
FT REPEAT 543..573
FT /note="PPR 17"
FT REPEAT 574..608
FT /note="PPR 18"
FT REPEAT 609..639
FT /note="PPR 19"
FT REPEAT 645..675
FT /note="PPR 20"
FT REGION 680..755
FT /note="Type E motif"
FT REGION 756..786
FT /note="Type E(+) motif"
FT REGION 787..882
FT /note="Type DYW motif"
SQ SEQUENCE 882 AA; 99022 MW; D9DE2B2B02628F9B CRC64;
MQTRVSSPFI SRALSSSSNL NELRRIHALV ISLGLDSSDF FSGKLIDKYS HFREPASSLS
VFRRVSPAKN VYLWNSIIRA FSKNGLFPEA LEFYGKLRES KVSPDKYTFP SVIKACAGLF
DAEMGDLVYE QILDMGFESD LFVGNALVDM YSRMGLLTRA RQVFDEMPVR DLVSWNSLIS
GYSSHGYYEE ALEIYHELKN SWIVPDSFTV SSVLPAFGNL LVVKQGQGLH GFALKSGVNS
VVVVNNGLVA MYLKFRRPTD ARRVFDEMDV RDSVSYNTMI CGYLKLEMVE ESVRMFLENL
DQFKPDLLTV SSVLRACGHL RDLSLAKYIY NYMLKAGFVL ESTVRNILID VYAKCGDMIT
ARDVFNSMEC KDTVSWNSII SGYIQSGDLM EAMKLFKMMM IMEEQADHIT YLMLISVSTR
LADLKFGKGL HSNGIKSGIC IDLSVSNALI DMYAKCGEVG DSLKIFSSMG TGDTVTWNTV
ISACVRFGDF ATGLQVTTQM RKSEVVPDMA TFLVTLPMCA SLAAKRLGKE IHCCLLRFGY
ESELQIGNAL IEMYSKCGCL ENSSRVFERM SRRDVVTWTG MIYAYGMYGE GEKALETFAD
MEKSGIVPDS VVFIAIIYAC SHSGLVDEGL ACFEKMKTHY KIDPMIEHYA CVVDLLSRSQ
KISKAEEFIQ AMPIKPDASI WASVLRACRT SGDMETAERV SRRIIELNPD DPGYSILASN
AYAALRKWDK VSLIRKSLKD KHITKNPGYS WIEVGKNVHV FSSGDDSAPQ SEAIYKSLEI
LYSLMAKEGY IPDPREVSQN LEEEEEKRRL ICGHSERLAI AFGLLNTEPG TPLQVMKNLR
VCGDCHEVTK LISKIVGREI LVRDANRFHL FKDGTCSCKD RW
