PP211_ARATH
ID PP211_ARATH Reviewed; 508 AA.
AC Q9M8W9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 25-MAY-2022, entry version 104.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g04130, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g04130; ORFNames=T6K12.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF26800.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AY050872; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC016829; AAF26800.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE74040.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74041.1; -; Genomic_DNA.
DR EMBL; AY050872; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001030630.1; NM_001035553.2.
DR RefSeq; NP_566222.1; NM_111284.3.
DR AlphaFoldDB; Q9M8W9; -.
DR SMR; Q9M8W9; -.
DR PaxDb; Q9M8W9; -.
DR PRIDE; Q9M8W9; -.
DR ProteomicsDB; 249170; -.
DR EnsemblPlants; AT3G04130.1; AT3G04130.1; AT3G04130.
DR EnsemblPlants; AT3G04130.2; AT3G04130.2; AT3G04130.
DR GeneID; 819568; -.
DR Gramene; AT3G04130.1; AT3G04130.1; AT3G04130.
DR Gramene; AT3G04130.2; AT3G04130.2; AT3G04130.
DR KEGG; ath:AT3G04130; -.
DR Araport; AT3G04130; -.
DR TAIR; locus:2103075; AT3G04130.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9M8W9; -.
DR OMA; KGHGCRP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M8W9; -.
DR PRO; PR:Q9M8W9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M8W9; baseline and differential.
DR Genevisible; Q9M8W9; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..74
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 75..508
FT /note="Pentatricopeptide repeat-containing protein
FT At3g04130, mitochondrial"
FT /id="PRO_0000356070"
FT REPEAT 120..150
FT /note="PPR 1"
FT REPEAT 154..188
FT /note="PPR 2"
FT REPEAT 189..219
FT /note="PPR 3"
FT REPEAT 223..257
FT /note="PPR 4"
FT REPEAT 258..292
FT /note="PPR 5"
FT REPEAT 293..327
FT /note="PPR 6"
FT REPEAT 328..363
FT /note="PPR 7"
FT REPEAT 364..398
FT /note="PPR 8"
FT REPEAT 400..434
FT /note="PPR 9"
FT REPEAT 436..470
FT /note="PPR 10"
SQ SEQUENCE 508 AA; 58706 MW; 839402DC68F314E0 CRC64;
MSWLIQNRIG NTLLRLNPSS SSIAIFSTFI KNLSTASEQL PETLDEYSQS EEIWNVIVGR
DGDRDSEDDV FKRLSSDEIC KRVNLSDGLV HKLLHRFRDD WRSALGILKW AESCKGHKHS
SDAYDMAVDI LGKAKKWDRM KEFVERMRGD KLVTLNTVAK IMRRFAGAGE WEEAVGIFDR
LGEFGLEKNT ESMNLLLDTL CKEKRVEQAR VVLLQLKSHI TPNAHTFNIF IHGWCKANRV
EEALWTIQEM KGHGFRPCVI SYTTIIRCYC QQFEFIKVYE MLSEMEANGS PPNSITYTTI
MSSLNAQKEF EEALRVATRM KRSGCKPDSL FYNCLIHTLA RAGRLEEAER VFRVEMPELG
VSINTSTYNS MIAMYCHHDE EDKAIELLKE MESSNLCNPD VHTYQPLLRS CFKRGDVVEV
GKLLKEMVTK HHLSLDESTY TFLIQRLCRA NMCEWAYCLF EEMISQDITP RHRTCLLLLE
EVKKKNMHES AERIEHIMKT VKLTAPVK
