PP213_ARATH
ID PP213_ARATH Reviewed; 602 AA.
AC Q9SR00; Q56XV0;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g04760, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At3g04760; ORFNames=F7O18.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC011437; AAF04902.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74132.1; -; Genomic_DNA.
DR EMBL; AY056218; AAL07067.1; -; mRNA.
DR EMBL; AY133775; AAM91709.1; -; mRNA.
DR EMBL; AK221573; BAD95034.1; -; mRNA.
DR RefSeq; NP_566237.1; NM_111348.2.
DR AlphaFoldDB; Q9SR00; -.
DR SMR; Q9SR00; -.
DR STRING; 3702.AT3G04760.1; -.
DR PaxDb; Q9SR00; -.
DR PRIDE; Q9SR00; -.
DR ProteomicsDB; 249089; -.
DR EnsemblPlants; AT3G04760.1; AT3G04760.1; AT3G04760.
DR GeneID; 819636; -.
DR Gramene; AT3G04760.1; AT3G04760.1; AT3G04760.
DR KEGG; ath:AT3G04760; -.
DR Araport; AT3G04760; -.
DR TAIR; locus:2084978; AT3G04760.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9SR00; -.
DR OMA; MMDQAYE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SR00; -.
DR PRO; PR:Q9SR00; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SR00; baseline and differential.
DR Genevisible; Q9SR00; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..78
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 79..602
FT /note="Pentatricopeptide repeat-containing protein
FT At3g04760, chloroplastic"
FT /id="PRO_0000356072"
FT REPEAT 88..122
FT /note="PPR 1"
FT REPEAT 123..153
FT /note="PPR 2"
FT REPEAT 157..191
FT /note="PPR 3"
FT REPEAT 192..226
FT /note="PPR 4"
FT REPEAT 227..261
FT /note="PPR 5"
FT REPEAT 262..296
FT /note="PPR 6"
FT REPEAT 297..331
FT /note="PPR 7"
FT REPEAT 332..366
FT /note="PPR 8"
FT REPEAT 367..401
FT /note="PPR 9"
FT REPEAT 402..436
FT /note="PPR 10"
FT REPEAT 437..471
FT /note="PPR 11"
FT REPEAT 472..506
FT /note="PPR 12"
FT REPEAT 507..541
FT /note="PPR 13"
FT REPEAT 542..576
FT /note="PPR 14"
FT REGION 42..85
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 294
FT /note="C -> S (in Ref. 4; BAD95034)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 602 AA; 67695 MW; CCEB4D1122C9BD8D CRC64;
MTPLSSELVG FTIPFYSKTQ KPYSNSSHGL LLSHNRSSLL TFSNSNPNND NGRSFSSSGA
RNLQTTTTTD ATLPTERRQQ HSQSLGFRDT QMLKIFHRSC RSGNYIESLH LLETMVRKGY
NPDVILCTKL IKGFFTLRNI PKAVRVMEIL EKFGQPDVFA YNALINGFCK MNRIDDATRV
LDRMRSKDFS PDTVTYNIMI GSLCSRGKLD LALKVLNQLL SDNCQPTVIT YTILIEATML
EGGVDEALKL MDEMLSRGLK PDMFTYNTII RGMCKEGMVD RAFEMVRNLE LKGCEPDVIS
YNILLRALLN QGKWEEGEKL MTKMFSEKCD PNVVTYSILI TTLCRDGKIE EAMNLLKLMK
EKGLTPDAYS YDPLIAAFCR EGRLDVAIEF LETMISDGCL PDIVNYNTVL ATLCKNGKAD
QALEIFGKLG EVGCSPNSSS YNTMFSALWS SGDKIRALHM ILEMMSNGID PDEITYNSMI
SCLCREGMVD EAFELLVDMR SCEFHPSVVT YNIVLLGFCK AHRIEDAINV LESMVGNGCR
PNETTYTVLI EGIGFAGYRA EAMELANDLV RIDAISEYSF KRLHRTFPLL NVLQRSSQTF
GY
