PP214_ARATH
ID PP214_ARATH Reviewed; 565 AA.
AC Q9MA95;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g05240;
GN Name=PCMP-E82; OrderedLocusNames=At3g05240; ORFNames=T12H1.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF27030.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009177; AAF27030.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE74210.1; -; Genomic_DNA.
DR RefSeq; NP_187175.2; NM_111397.2.
DR AlphaFoldDB; Q9MA95; -.
DR SMR; Q9MA95; -.
DR BioGRID; 5023; 1.
DR STRING; 3702.AT3G05240.1; -.
DR PaxDb; Q9MA95; -.
DR PRIDE; Q9MA95; -.
DR EnsemblPlants; AT3G05240.1; AT3G05240.1; AT3G05240.
DR GeneID; 819688; -.
DR Gramene; AT3G05240.1; AT3G05240.1; AT3G05240.
DR KEGG; ath:AT3G05240; -.
DR Araport; AT3G05240; -.
DR TAIR; locus:2096244; AT3G05240.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9MA95; -.
DR OMA; FDNIPKW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9MA95; -.
DR PRO; PR:Q9MA95; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9MA95; differential.
DR Genevisible; Q9MA95; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 13.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..565
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g05240"
FT /id="PRO_0000356073"
FT REPEAT 37..70
FT /note="PPR 1"
FT REPEAT 71..105
FT /note="PPR 2"
FT REPEAT 106..140
FT /note="PPR 3"
FT REPEAT 141..171
FT /note="PPR 4"
FT REPEAT 172..206
FT /note="PPR 5"
FT REPEAT 207..241
FT /note="PPR 6"
FT REPEAT 250..280
FT /note="PPR 7"
FT REPEAT 281..315
FT /note="PPR 8"
FT REPEAT 316..350
FT /note="PPR 9"
FT REPEAT 351..381
FT /note="PPR 10"
FT REPEAT 382..416
FT /note="PPR 12"
FT REPEAT 418..448
FT /note="PPR 13"
FT REPEAT 454..484
FT /note="PPR 14"
FT REGION 489..564
FT /note="Type E motif"
SQ SEQUENCE 565 AA; 63290 MW; 683C5AF4A484EC86 CRC64;
MMKKHYKPIL SQLENCRSLV ELNQLHGLMI KSSVIRNVIP LSRLIDFCTT CPETMNLSYA
RSVFESIDCP SVYIWNSMIR GYSNSPNPDK ALIFYQEMLR KGYSPDYFTF PYVLKACSGL
RDIQFGSCVH GFVVKTGFEV NMYVSTCLLH MYMCCGEVNY GLRVFEDIPQ WNVVAWGSLI
SGFVNNNRFS DAIEAFREMQ SNGVKANETI MVDLLVACGR CKDIVTGKWF HGFLQGLGFD
PYFQSKVGFN VILATSLIDM YAKCGDLRTA RYLFDGMPER TLVSWNSIIT GYSQNGDAEE
ALCMFLDMLD LGIAPDKVTF LSVIRASMIQ GCSQLGQSIH AYVSKTGFVK DAAIVCALVN
MYAKTGDAES AKKAFEDLEK KDTIAWTVVI IGLASHGHGN EALSIFQRMQ EKGNATPDGI
TYLGVLYACS HIGLVEEGQR YFAEMRDLHG LEPTVEHYGC MVDILSRAGR FEEAERLVKT
MPVKPNVNIW GALLNGCDIH ENLELTDRIR SMVAEPEELG SGIYVLLSNI YAKAGRWADV
KLIRESMKSK RVDKVLGHSS VETMF
