PP219_ARATH
ID PP219_ARATH Reviewed; 685 AA.
AC Q9SR82;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g08820;
GN Name=PCMP-H84; OrderedLocusNames=At3g08820; ORFNames=F17O14.29, T16O11.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC010871; AAF07847.1; -; Genomic_DNA.
DR EMBL; AC012562; AAG51349.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74683.1; -; Genomic_DNA.
DR RefSeq; NP_187494.1; NM_111716.2.
DR AlphaFoldDB; Q9SR82; -.
DR SMR; Q9SR82; -.
DR BioGRID; 5364; 2.
DR PaxDb; Q9SR82; -.
DR PRIDE; Q9SR82; -.
DR ProteomicsDB; 249091; -.
DR EnsemblPlants; AT3G08820.1; AT3G08820.1; AT3G08820.
DR GeneID; 820029; -.
DR Gramene; AT3G08820.1; AT3G08820.1; AT3G08820.
DR KEGG; ath:AT3G08820; -.
DR Araport; AT3G08820; -.
DR TAIR; locus:2077878; AT3G08820.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9SR82; -.
DR OMA; NRFHCFI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SR82; -.
DR PRO; PR:Q9SR82; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SR82; baseline and differential.
DR Genevisible; Q9SR82; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..685
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g08820"
FT /id="PRO_0000356078"
FT REPEAT 75..109
FT /note="PPR 1"
FT REPEAT 110..144
FT /note="PPR 2"
FT REPEAT 145..175
FT /note="PPR 3"
FT REPEAT 176..210
FT /note="PPR 4"
FT REPEAT 211..245
FT /note="PPR 5"
FT REPEAT 246..276
FT /note="PPR 6"
FT REPEAT 277..311
FT /note="PPR 7"
FT REPEAT 312..346
FT /note="PPR 8"
FT REPEAT 347..381
FT /note="PPR 9"
FT REPEAT 383..412
FT /note="PPR 10"
FT REPEAT 413..443
FT /note="PPR 11"
FT REPEAT 449..479
FT /note="PPR 12"
FT REGION 484..559
FT /note="Type E motif"
FT REGION 560..590
FT /note="Type E(+) motif"
FT REGION 591..685
FT /note="Type DYW motif"
SQ SEQUENCE 685 AA; 77326 MW; D2EEAF4EF8DB5159 CRC64;
MSIVTVPSAT SKVQQIKTLI SVACTVNHLK QIHVSLINHH LHHDTFLVNL LLKRTLFFRQ
TKYSYLLFSH TQFPNIFLYN SLINGFVNNH LFHETLDLFL SIRKHGLYLH GFTFPLVLKA
CTRASSRKLG IDLHSLVVKC GFNHDVAAMT SLLSIYSGSG RLNDAHKLFD EIPDRSVVTW
TALFSGYTTS GRHREAIDLF KKMVEMGVKP DSYFIVQVLS ACVHVGDLDS GEWIVKYMEE
MEMQKNSFVR TTLVNLYAKC GKMEKARSVF DSMVEKDIVT WSTMIQGYAS NSFPKEGIEL
FLQMLQENLK PDQFSIVGFL SSCASLGALD LGEWGISLID RHEFLTNLFM ANALIDMYAK
CGAMARGFEV FKEMKEKDIV IMNAAISGLA KNGHVKLSFA VFGQTEKLGI SPDGSTFLGL
LCGCVHAGLI QDGLRFFNAI SCVYALKRTV EHYGCMVDLW GRAGMLDDAY RLICDMPMRP
NAIVWGALLS GCRLVKDTQL AETVLKELIA LEPWNAGNYV QLSNIYSVGG RWDEAAEVRD
MMNKKGMKKI PGYSWIELEG KVHEFLADDK SHPLSDKIYA KLEDLGNEMR LMGFVPTTEF
VFFDVEEEEK ERVLGYHSEK LAVALGLIST DHGQVIRVVK NLRVCGDCHE VMKLISKITR
REIVVRDNNR FHCFTNGSCS CNDYW
