PP220_ARATH
ID PP220_ARATH Reviewed; 1028 AA.
AC Q9SS83;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g09040, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E88; OrderedLocusNames=At3g09040; ORFNames=MZB10.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009326; AAD56320.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74713.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64907.1; -; Genomic_DNA.
DR RefSeq; NP_001319506.1; NM_001337795.1.
DR RefSeq; NP_187516.1; NM_111738.1.
DR AlphaFoldDB; Q9SS83; -.
DR SMR; Q9SS83; -.
DR STRING; 3702.AT3G09040.1; -.
DR PaxDb; Q9SS83; -.
DR PRIDE; Q9SS83; -.
DR EnsemblPlants; AT3G09040.1; AT3G09040.1; AT3G09040.
DR EnsemblPlants; AT3G09040.4; AT3G09040.4; AT3G09040.
DR GeneID; 820057; -.
DR Gramene; AT3G09040.1; AT3G09040.1; AT3G09040.
DR Gramene; AT3G09040.4; AT3G09040.4; AT3G09040.
DR KEGG; ath:AT3G09040; -.
DR Araport; AT3G09040; -.
DR TAIR; locus:2095289; AT3G09040.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_0_1; -.
DR InParanoid; Q9SS83; -.
DR OMA; KACKTIH; -.
DR PhylomeDB; Q9SS83; -.
DR PRO; PR:Q9SS83; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SS83; baseline and differential.
DR Genevisible; Q9SS83; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 7.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 19.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..30
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 31..1028
FT /note="Pentatricopeptide repeat-containing protein
FT At3g09040, mitochondrial"
FT /id="PRO_0000356079"
FT REPEAT 94..123
FT /note="PPR 1"
FT REPEAT 124..158
FT /note="PPR 2"
FT REPEAT 159..193
FT /note="PPR 3"
FT REPEAT 194..224
FT /note="PPR 4"
FT REPEAT 225..259
FT /note="PPR 5"
FT REPEAT 260..290
FT /note="PPR 6"
FT REPEAT 291..325
FT /note="PPR 7"
FT REPEAT 326..360
FT /note="PPR 8"
FT REPEAT 361..391
FT /note="PPR 9"
FT REPEAT 392..426
FT /note="PPR 10"
FT REPEAT 427..461
FT /note="PPR 11"
FT REPEAT 462..492
FT /note="PPR 12"
FT REPEAT 493..527
FT /note="PPR 13"
FT REPEAT 528..562
FT /note="PPR 14"
FT REPEAT 563..593
FT /note="PPR 15"
FT REPEAT 594..627
FT /note="PPR 16"
FT REPEAT 628..662
FT /note="PPR 17"
FT REPEAT 664..694
FT /note="PPR 18"
FT REPEAT 696..730
FT /note="PPR 19"
FT REPEAT 731..765
FT /note="PPR 20"
FT REPEAT 766..796
FT /note="PPR 21"
FT REPEAT 798..832
FT /note="PPR 22"
FT REPEAT 833..863
FT /note="PPR 23"
FT REPEAT 869..899
FT /note="PPR 24"
FT REGION 904..979
FT /note="Type E motif"
FT REGION 980..1010
FT /note="Type E(+) motif"
SQ SEQUENCE 1028 AA; 115014 MW; 0F069531A545FE58 CRC64;
MYFRVLLTPS SAMFDSFSFV RRLSYSPDLG RRIYGHVLPS HDQIHQRLLE ICLGQCKLFK
SRKVFDEMPQ RLALALRIGK AVHSKSLILG IDSEGRLGNA IVDLYAKCAQ VSYAEKQFDF
LEKDVTAWNS MLSMYSSIGK PGKVLRSFVS LFENQIFPNK FTFSIVLSTC ARETNVEFGR
QIHCSMIKMG LERNSYCGGA LVDMYAKCDR ISDARRVFEW IVDPNTVCWT CLFSGYVKAG
LPEEAVLVFE RMRDEGHRPD HLAFVTVINT YIRLGKLKDA RLLFGEMSSP DVVAWNVMIS
GHGKRGCETV AIEYFFNMRK SSVKSTRSTL GSVLSAIGIV ANLDLGLVVH AEAIKLGLAS
NIYVGSSLVS MYSKCEKMEA AAKVFEALEE KNDVFWNAMI RGYAHNGESH KVMELFMDMK
SSGYNIDDFT FTSLLSTCAA SHDLEMGSQF HSIIIKKKLA KNLFVGNALV DMYAKCGALE
DARQIFERMC DRDNVTWNTI IGSYVQDENE SEAFDLFKRM NLCGIVSDGA CLASTLKACT
HVHGLYQGKQ VHCLSVKCGL DRDLHTGSSL IDMYSKCGII KDARKVFSSL PEWSVVSMNA
LIAGYSQNNL EEAVVLFQEM LTRGVNPSEI TFATIVEACH KPESLTLGTQ FHGQITKRGF
SSEGEYLGIS LLGMYMNSRG MTEACALFSE LSSPKSIVLW TGMMSGHSQN GFYEEALKFY
KEMRHDGVLP DQATFVTVLR VCSVLSSLRE GRAIHSLIFH LAHDLDELTS NTLIDMYAKC
GDMKGSSQVF DEMRRRSNVV SWNSLINGYA KNGYAEDALK IFDSMRQSHI MPDEITFLGV
LTACSHAGKV SDGRKIFEMM IGQYGIEARV DHVACMVDLL GRWGYLQEAD DFIEAQNLKP
DARLWSSLLG ACRIHGDDIR GEISAEKLIE LEPQNSSAYV LLSNIYASQG CWEKANALRK
VMRDRGVKKV PGYSWIDVEQ RTHIFAAGDK SHSEIGKIEM FLEDLYDLMK DDAVVNPDIV
EQGSLDCV
