PP225_ARATH
ID PP225_ARATH Reviewed; 551 AA.
AC Q9LK58;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g13150;
GN OrderedLocusNames=At3g13150; ORFNames=MJG19.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP000375; BAB01406.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75302.1; -; Genomic_DNA.
DR EMBL; BT023440; AAY56431.1; -; mRNA.
DR RefSeq; NP_187922.1; NM_112154.4.
DR AlphaFoldDB; Q9LK58; -.
DR SMR; Q9LK58; -.
DR STRING; 3702.AT3G13150.1; -.
DR PaxDb; Q9LK58; -.
DR PRIDE; Q9LK58; -.
DR ProteomicsDB; 249174; -.
DR EnsemblPlants; AT3G13150.1; AT3G13150.1; AT3G13150.
DR GeneID; 820503; -.
DR Gramene; AT3G13150.1; AT3G13150.1; AT3G13150.
DR KEGG; ath:AT3G13150; -.
DR Araport; AT3G13150; -.
DR TAIR; locus:2090014; AT3G13150.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_10_3_1; -.
DR InParanoid; Q9LK58; -.
DR OMA; IRIMLLY; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LK58; -.
DR PRO; PR:Q9LK58; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LK58; baseline and differential.
DR Genevisible; Q9LK58; AT.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..551
FT /note="Pentatricopeptide repeat-containing protein
FT At3g13150"
FT /id="PRO_0000356084"
FT REPEAT 121..155
FT /note="PPR 1"
FT REPEAT 156..191
FT /note="PPR 2"
FT REPEAT 192..226
FT /note="PPR 3"
FT REPEAT 227..261
FT /note="PPR 4"
FT REPEAT 262..296
FT /note="PPR 5"
FT REPEAT 297..331
FT /note="PPR 6"
FT REPEAT 332..366
FT /note="PPR 7"
FT REGION 22..67
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 409..435
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 449..551
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 24..62
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 551 AA; 60630 MW; 576CC2F88AAC295A CRC64;
MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK
DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA KKFSTIDEVL QYQKKFDDIK
SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF
KELPEKLGIT PDLVTYNTMI KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR
RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI
KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF RYLPDLSAGK KKTTSSPVSS
SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS
YSSFSSSPDS SSSVSSSLFS SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN
SSSSSSGLLD D