PP226_ARATH
ID PP226_ARATH Reviewed; 394 AA.
AC Q9LK57; Q8L8Z2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g13160, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g13160; ORFNames=MJG19.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RC STRAIN=cv. Landsberg erecta;
RX PubMed=14671022; DOI=10.1105/tpc.016055;
RA Heazlewood J.L., Tonti-Filippini J.S., Gout A.M., Day D.A., Whelan J.,
RA Millar A.H.;
RT "Experimental analysis of the Arabidopsis mitochondrial proteome highlights
RT signaling and regulatory components, provides assessment of targeting
RT prediction programs, and indicates plant-specific mitochondrial proteins.";
RL Plant Cell 16:241-256(2004).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:14671022}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP000375; BAB01407.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75303.1; -; Genomic_DNA.
DR EMBL; AY136471; AAM97136.1; -; mRNA.
DR EMBL; BT002597; AAO00957.1; -; mRNA.
DR EMBL; AY088725; AAM67043.1; -; mRNA.
DR RefSeq; NP_566445.1; NM_112155.2.
DR AlphaFoldDB; Q9LK57; -.
DR SMR; Q9LK57; -.
DR BioGRID; 5839; 4.
DR IntAct; Q9LK57; 3.
DR STRING; 3702.AT3G13160.1; -.
DR SwissPalm; Q9LK57; -.
DR PaxDb; Q9LK57; -.
DR PRIDE; Q9LK57; -.
DR ProteomicsDB; 248947; -.
DR EnsemblPlants; AT3G13160.1; AT3G13160.1; AT3G13160.
DR GeneID; 820505; -.
DR Gramene; AT3G13160.1; AT3G13160.1; AT3G13160.
DR KEGG; ath:AT3G13160; -.
DR Araport; AT3G13160; -.
DR TAIR; locus:2090034; AT3G13160.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_10_3_1; -.
DR InParanoid; Q9LK57; -.
DR OMA; KFKKACQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LK57; -.
DR PRO; PR:Q9LK57; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LK57; baseline and differential.
DR Genevisible; Q9LK57; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 8.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..24
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 25..394
FT /note="Pentatricopeptide repeat-containing protein
FT At3g13160, mitochondrial"
FT /id="PRO_0000356085"
FT REPEAT 105..139
FT /note="PPR 1"
FT REPEAT 140..170
FT /note="PPR 2"
FT REPEAT 176..210
FT /note="PPR 3"
FT REPEAT 211..245
FT /note="PPR 4"
FT REPEAT 246..280
FT /note="PPR 5"
FT REPEAT 281..315
FT /note="PPR 6"
FT REPEAT 316..350
FT /note="PPR 7"
FT REPEAT 351..385
FT /note="PPR 8"
FT CONFLICT 18
FT /note="H -> P (in Ref. 4; AAM67043)"
FT /evidence="ECO:0000305"
FT CONFLICT 141
FT /note="A -> V (in Ref. 4; AAM67043)"
FT /evidence="ECO:0000305"
FT CONFLICT 165
FT /note="K -> E (in Ref. 4; AAM67043)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 394 AA; 44928 MW; A99D066F64506270 CRC64;
MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK
ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY PNMSKEGFVA RIINLYGRVG
MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY
NTLIKGLCGK GSFTEAVALI DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE
KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD
ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
