PP227_ARATH
ID PP227_ARATH Reviewed; 628 AA.
AC Q9LIC3;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 114.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H85; OrderedLocusNames=At3g13770; ORFNames=MMM17.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP001307; BAB01925.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75409.1; -; Genomic_DNA.
DR RefSeq; NP_187990.1; NM_112227.1.
DR AlphaFoldDB; Q9LIC3; -.
DR SMR; Q9LIC3; -.
DR BioGRID; 5920; 1.
DR PaxDb; Q9LIC3; -.
DR PRIDE; Q9LIC3; -.
DR ProteomicsDB; 249175; -.
DR EnsemblPlants; AT3G13770.1; AT3G13770.1; AT3G13770.
DR GeneID; 820586; -.
DR Gramene; AT3G13770.1; AT3G13770.1; AT3G13770.
DR KEGG; ath:AT3G13770; -.
DR Araport; AT3G13770; -.
DR TAIR; locus:2091546; AT3G13770.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9LIC3; -.
DR OMA; DTEPNEF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LIC3; -.
DR PRO; PR:Q9LIC3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LIC3; baseline and differential.
DR Genevisible; Q9LIC3; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..19
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 20..628
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g13770, mitochondrial"
FT /id="PRO_0000356086"
FT REPEAT 51..85
FT /note="PPR 1"
FT REPEAT 86..116
FT /note="PPR 2"
FT REPEAT 117..151
FT /note="PPR 3"
FT REPEAT 152..186
FT /note="PPR 4"
FT REPEAT 187..217
FT /note="PPR 5"
FT REPEAT 218..252
FT /note="PPR 6"
FT REPEAT 253..287
FT /note="PPR 7"
FT REPEAT 288..318
FT /note="PPR 8"
FT REPEAT 319..353
FT /note="PPR 9"
FT REPEAT 355..389
FT /note="PPR 10"
FT REPEAT 392..422
FT /note="PPR 11"
FT REGION 427..502
FT /note="Type E motif"
FT REGION 503..533
FT /note="Type E(+) motif"
FT REGION 534..628
FT /note="Type DYW motif"
SQ SEQUENCE 628 AA; 70736 MW; A3987943B47E83CB CRC64;
MFNLMRLIHR SFSSSPTNYV LQTILPISQL CSNGRLQEAL LEMAMLGPEM GFHGYDALLN
ACLDKRALRD GQRVHAHMIK TRYLPATYLR TRLLIFYGKC DCLEDARKVL DEMPEKNVVS
WTAMISRYSQ TGHSSEALTV FAEMMRSDGK PNEFTFATVL TSCIRASGLG LGKQIHGLIV
KWNYDSHIFV GSSLLDMYAK AGQIKEAREI FECLPERDVV SCTAIIAGYA QLGLDEEALE
MFHRLHSEGM SPNYVTYASL LTALSGLALL DHGKQAHCHV LRRELPFYAV LQNSLIDMYS
KCGNLSYARR LFDNMPERTA ISWNAMLVGY SKHGLGREVL ELFRLMRDEK RVKPDAVTLL
AVLSGCSHGR MEDTGLNIFD GMVAGEYGTK PGTEHYGCIV DMLGRAGRID EAFEFIKRMP
SKPTAGVLGS LLGACRVHLS VDIGESVGRR LIEIEPENAG NYVILSNLYA SAGRWADVNN
VRAMMMQKAV TKEPGRSWIQ HEQTLHYFHA NDRTHPRREE VLAKMKEISI KMKQAGYVPD
LSCVLYDVDE EQKEKMLLGH SEKLALTFGL IATGEGIPIR VFKNLRICVD CHNFAKIFSK
VFEREVSLRD KNRFHQIVDG ICSCGDYW
