PP228_ARATH
ID PP228_ARATH Reviewed; 748 AA.
AC Q9LRV9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g13880;
GN Name=PCMP-E89; OrderedLocusNames=At3g13880; ORFNames=MCP4.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 642-748.
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB028610; BAB02912.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75430.1; -; Genomic_DNA.
DR EMBL; BX824350; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_188004.1; NM_112242.3.
DR AlphaFoldDB; Q9LRV9; -.
DR SMR; Q9LRV9; -.
DR STRING; 3702.AT3G13880.1; -.
DR PaxDb; Q9LRV9; -.
DR PRIDE; Q9LRV9; -.
DR ProteomicsDB; 249093; -.
DR EnsemblPlants; AT3G13880.1; AT3G13880.1; AT3G13880.
DR GeneID; 820601; -.
DR Gramene; AT3G13880.1; AT3G13880.1; AT3G13880.
DR KEGG; ath:AT3G13880; -.
DR Araport; AT3G13880; -.
DR TAIR; locus:2087969; AT3G13880.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9LRV9; -.
DR OMA; CHSTMKL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LRV9; -.
DR PRO; PR:Q9LRV9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LRV9; baseline and differential.
DR Genevisible; Q9LRV9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:1900864; P:mitochondrial RNA modification; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..748
FT /note="Pentatricopeptide repeat-containing protein
FT At3g13880"
FT /id="PRO_0000356087"
FT REPEAT 46..80
FT /note="PPR 1"
FT REPEAT 81..111
FT /note="PPR 2"
FT REPEAT 112..146
FT /note="PPR 3"
FT REPEAT 147..181
FT /note="PPR 4"
FT REPEAT 182..212
FT /note="PPR 5"
FT REPEAT 213..247
FT /note="PPR 6"
FT REPEAT 248..285
FT /note="PPR 7"
FT REPEAT 286..316
FT /note="PPR 8"
FT REPEAT 317..356
FT /note="PPR 9"
FT REPEAT 357..391
FT /note="PPR 10"
FT REPEAT 392..422
FT /note="PPR 11"
FT REPEAT 423..457
FT /note="PPR 12"
FT REPEAT 458..492
FT /note="PPR 13"
FT REPEAT 493..523
FT /note="PPR 14"
FT REPEAT 524..558
FT /note="PPR 15"
FT REPEAT 559..589
FT /note="PPR 16"
FT REPEAT 595..629
FT /note="PPR 17"
FT REGION 630..705
FT /note="Type E motif"
FT REGION 706..736
FT /note="Type E(+) motif"
SQ SEQUENCE 748 AA; 83194 MW; F1C5D4F3E51E5109 CRC64;
MLLQFRAKTF FNNIAQDSLV TLITKRVGLG YRFLSSLCQP KNTALDSEGY KILFQTAAKS
GSVVLGKLAH GHMIKSSLNP CLYLLNNLLN MYCKCRELGF ARQLFDRMPE RNIISFNSLI
SGYTQMGFYE QAMELFLEAR EANLKLDKFT YAGALGFCGE RCDLDLGELL HGLVVVNGLS
QQVFLINVLI DMYSKCGKLD QAMSLFDRCD ERDQVSWNSL ISGYVRVGAA EEPLNLLAKM
HRDGLNLTTY ALGSVLKACC INLNEGFIEK GMAIHCYTAK LGMEFDIVVR TALLDMYAKN
GSLKEAIKLF SLMPSKNVVT YNAMISGFLQ MDEITDEASS EAFKLFMDMQ RRGLEPSPST
FSVVLKACSA AKTLEYGRQI HALICKNNFQ SDEFIGSALI ELYALMGSTE DGMQCFASTS
KQDIASWTSM IDCHVQNEQL ESAFDLFRQL FSSHIRPEEY TVSLMMSACA DFAALSSGEQ
IQGYAIKSGI DAFTSVKTSS ISMYAKSGNM PLANQVFIEV QNPDVATYSA MISSLAQHGS
ANEALNIFES MKTHGIKPNQ QAFLGVLIAC CHGGLVTQGL KYFQCMKNDY RINPNEKHFT
CLVDLLGRTG RLSDAENLIL SSGFQDHPVT WRALLSSCRV YKDSVIGKRV AERLMELEPE
ASGSYVLLHN IYNDSGVNSS AEEVRELMRD RGVKKEPALS WIVIGNQTHS FAVADLSHPS
SQMIYTMLET MDNVDFVDYT LVHFCSVT
