PP229_ARATH
ID PP229_ARATH Reviewed; 710 AA.
AC Q9LUL5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g14330;
GN Name=PCMP-H57; OrderedLocusNames=At3g14330; ORFNames=MLN21.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB01039.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB022220; BAB01039.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002686; AEE75502.1; -; Genomic_DNA.
DR RefSeq; NP_188050.1; NM_112291.2.
DR AlphaFoldDB; Q9LUL5; -.
DR SMR; Q9LUL5; -.
DR STRING; 3702.AT3G14330.1; -.
DR PaxDb; Q9LUL5; -.
DR PRIDE; Q9LUL5; -.
DR ProteomicsDB; 249176; -.
DR EnsemblPlants; AT3G14330.1; AT3G14330.1; AT3G14330.
DR GeneID; 820653; -.
DR Gramene; AT3G14330.1; AT3G14330.1; AT3G14330.
DR KEGG; ath:AT3G14330; -.
DR Araport; AT3G14330; -.
DR TAIR; locus:2090990; AT3G14330.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9LUL5; -.
DR OMA; AIGYSRN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LUL5; -.
DR PRO; PR:Q9LUL5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LUL5; baseline and differential.
DR Genevisible; Q9LUL5; AT.
DR GO; GO:0009507; C:chloroplast; IEA:GOC.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:1900865; P:chloroplast RNA modification; IMP:TAIR.
DR GO; GO:0016554; P:cytidine to uridine editing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..710
FT /note="Pentatricopeptide repeat-containing protein
FT At3g14330"
FT /id="PRO_0000356088"
FT REPEAT 166..196
FT /note="PPR 1"
FT REPEAT 200..234
FT /note="PPR 2"
FT REPEAT 235..269
FT /note="PPR 3"
FT REPEAT 270..304
FT /note="PPR 4"
FT REPEAT 305..331
FT /note="PPR 5"
FT REPEAT 336..370
FT /note="PPR 6"
FT REPEAT 371..401
FT /note="PPR 7"
FT REPEAT 402..436
FT /note="PPR 8"
FT REPEAT 437..467
FT /note="PPR 9"
FT REPEAT 473..503
FT /note="PPR 10"
FT REGION 508..583
FT /note="Type E motif"
FT REGION 584..615
FT /note="Type E(+) motif"
FT REGION 616..710
FT /note="Type DYW motif"
SQ SEQUENCE 710 AA; 79766 MW; 984A014A8C1F6F4C CRC64;
MMIGKLWRSV GTVGKFDGRY DGVRTMVGKA SNRAGVHVTD TVLFEETSFE FSPSLTPELN
EFPMPSLDVI TPQAYLTPLG SQSINHAKFL QIPWRQFVFT KPLGLSKSTK LDEAVTLIEN
SSSSPSNLST PEAYTDLLHA CISAKSLHHG IKICSLILNN PSLRHNPKLL SKLITLFSVC
RRLDLARKIF DDVTDSSLLT EKVWAAMAIG YSRNGSPRDA LIVYVDMLCS FIEPGNFSIS
VALKACVDLK DLRVGRGIHA QIVKRKEKVD QVVYNVLLKL YMESGLFDDA RKVFDGMSER
NVVTWNSLIS VLSKKVRVHE MFNLFRKMQE EMIGFSWATL TTILPACSRV AALLTGKEIH
AQILKSKEKP DVPLLNSLMD MYGKCGEVEY SRRVFDVMLT KDLASWNIML NCYAINGNIE
EVINLFEWMI ESGVAPDGIT FVALLSGCSD TGLTEYGLSL FERMKTEFRV SPALEHYACL
VDILGRAGKI KEAVKVIETM PFKPSASIWG SLLNSCRLHG NVSVGEIAAK ELFVLEPHNP
GNYVMVSNIY ADAKMWDNVD KIREMMKQRG VKKEAGCSWV QVKDKIQIFV AGGGYEFRNS
DEYKKVWTEL QEAIEKSGYS PNTSVVLHDV DEETKANWVC GHSERLATTY SLIHTGEGVP
IRITKNLRVC ADCHSWMKIV SQVTRRVIVL RDTKRFHHFV DGICSCKDYW
