PP234_ARATH
ID PP234_ARATH Reviewed; 610 AA.
AC Q9LRP6;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g15590, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g15590; ORFNames=MQD17.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP LEU-71.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB028619; BAB01348.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75696.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65597.1; -; Genomic_DNA.
DR EMBL; AY102108; AAM26678.1; -; mRNA.
DR EMBL; BT002636; AAO11552.1; -; mRNA.
DR RefSeq; NP_001327555.1; NM_001338178.1.
DR RefSeq; NP_188178.2; NM_112427.5.
DR AlphaFoldDB; Q9LRP6; -.
DR SMR; Q9LRP6; -.
DR STRING; 3702.AT3G15590.1; -.
DR SwissPalm; Q9LRP6; -.
DR PaxDb; Q9LRP6; -.
DR PRIDE; Q9LRP6; -.
DR ProteomicsDB; 248948; -.
DR EnsemblPlants; AT3G15590.1; AT3G15590.1; AT3G15590.
DR EnsemblPlants; AT3G15590.2; AT3G15590.2; AT3G15590.
DR GeneID; 820799; -.
DR Gramene; AT3G15590.1; AT3G15590.1; AT3G15590.
DR Gramene; AT3G15590.2; AT3G15590.2; AT3G15590.
DR KEGG; ath:AT3G15590; -.
DR Araport; AT3G15590; -.
DR TAIR; locus:2092565; AT3G15590.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_1_0_1; -.
DR InParanoid; Q9LRP6; -.
DR OMA; GANTQFE; -.
DR OrthoDB; 494564at2759; -.
DR PhylomeDB; Q9LRP6; -.
DR PRO; PR:Q9LRP6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LRP6; baseline and differential.
DR Genevisible; Q9LRP6; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13812; PPR_3; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..71
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 72..610
FT /note="Pentatricopeptide repeat-containing protein
FT At3g15590, mitochondrial"
FT /id="PRO_0000356093"
FT REPEAT 241..275
FT /note="PPR 1"
FT REPEAT 276..309
FT /note="PPR 2"
FT REPEAT 310..344
FT /note="PPR 3"
FT REPEAT 345..379
FT /note="PPR 4"
FT REPEAT 380..410
FT /note="PPR 5"
FT REPEAT 412..442
FT /note="PPR 6"
FT REPEAT 447..481
FT /note="PPR 7"
FT REPEAT 482..517
FT /note="PPR 8"
FT REPEAT 518..552
FT /note="PPR 9"
FT REGION 88..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 108..123
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 124..142
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 610 AA; 69394 MW; D9338AAA58FB65F0 CRC64;
MYSLSRILQR SQRYNFAPSS FGAVSKLEVS SGGDKERVFK SFGLIYSKPQ GLVRLYSARD
VFSRFFGIHK LSSIADAKDK GDEVVREEEL SESEEAVPVS GDVPEGVVDD DSLFEPELGS
DNDDLEIEEK HSKDGGKPTK KRGQSELYES IVAYKSVKHV LEKWVKEGKD LSQAEVTLAI
HNLRKRKSYA MCLQLWEWLG ANTQFEFTEA NYASQLDLVA KVHSLQKAEI FLKDIPESSR
GEVVYRTLLA NCVLKHHVNK AEDIFNKMKE LKFPTSVFAC NQLLLLYSMH DRKKISDVLL
LMERENIKPS RATYHFLINS KGLAGDITGM EKIVETIKEE GIELDPELQS ILAKYYIRAG
LKERAQDLMK EIEGKGLQQT PWVCRSLLPL YADIGDSDNV RRLSRFVDQN PRYDNCISAI
KAWGKLKEVE EAEAVFERLV EKYKIFPMMP YFALMEIYTE NKMLAKGRDL VKRMGNAGIA
IGPSTWHALV KLYIKAGEVG KAELILNRAT KDNKMRPMFT TYMAILEEYA KRGDVHNTEK
VFMKMKRASY AAQLMQYETV LLAYINAKTP AYGMIERMKA DNVFPNKSLA AKLAQVNPFK
KCPVSVLLDI
