PP236_ARATH
ID PP236_ARATH Reviewed; 642 AA.
AC Q9LW84; Q84W36;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g16010;
GN OrderedLocusNames=At3g16010; ORFNames=MSL1.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB012247; BAB02667.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75762.1; -; Genomic_DNA.
DR EMBL; BT004272; AAO42273.1; -; mRNA.
DR RefSeq; NP_188222.1; NM_112471.3.
DR AlphaFoldDB; Q9LW84; -.
DR SMR; Q9LW84; -.
DR STRING; 3702.AT3G16010.1; -.
DR iPTMnet; Q9LW84; -.
DR PaxDb; Q9LW84; -.
DR PRIDE; Q9LW84; -.
DR ProteomicsDB; 248950; -.
DR EnsemblPlants; AT3G16010.1; AT3G16010.1; AT3G16010.
DR GeneID; 820846; -.
DR Gramene; AT3G16010.1; AT3G16010.1; AT3G16010.
DR KEGG; ath:AT3G16010; -.
DR Araport; AT3G16010; -.
DR TAIR; locus:2093472; AT3G16010.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9LW84; -.
DR OMA; QVKGRKC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LW84; -.
DR PRO; PR:Q9LW84; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LW84; baseline and differential.
DR Genevisible; Q9LW84; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:0000373; P:Group II intron splicing; IMP:TAIR.
DR GO; GO:0032981; P:mitochondrial respiratory chain complex I assembly; IMP:TAIR.
DR GO; GO:0000963; P:mitochondrial RNA processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..642
FT /note="Pentatricopeptide repeat-containing protein
FT At3g16010"
FT /id="PRO_0000356095"
FT REPEAT 125..159
FT /note="PPR 1"
FT REPEAT 161..195
FT /note="PPR 2"
FT REPEAT 196..230
FT /note="PPR 3"
FT REPEAT 232..266
FT /note="PPR 4"
FT REPEAT 267..301
FT /note="PPR 5"
FT REPEAT 302..336
FT /note="PPR 6"
FT REPEAT 337..371
FT /note="PPR 7"
FT REPEAT 372..407
FT /note="PPR 8"
FT REPEAT 408..442
FT /note="PPR 9"
FT REPEAT 443..473
FT /note="PPR 10"
FT REPEAT 478..512
FT /note="PPR 11"
FT REPEAT 513..547
FT /note="PPR 12"
FT REPEAT 548..582
FT /note="PPR 13"
FT REPEAT 583..617
FT /note="PPR 14"
FT CONFLICT 464
FT /note="N -> D (in Ref. 3; AAO42273)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 642 AA; 72925 MW; 25278E2CB794CC3F CRC64;
MMYVSARSGS AKRSISSLPH LSQRFKQTEN EIVQMFSVPN HEESEKPQEK WKLSRKDPSV
RMLDERFIRI VKIFKWGPDA EKALEVLKLK VDHRLVRSIL EIDVEINVKI QFFKWAGKRR
NFQHDCSTYM TLIRCLEEAR LYGEMYRTIQ EVVRNTYVSV SPAVLSELVK ALGRAKMVSK
ALSVFYQAKG RKCKPTSSTY NSVILMLMQE GQHEKVHEVY TEMCNEGDCF PDTITYSALI
SSYEKLGRND SAIRLFDEMK DNCMQPTEKI YTTLLGIYFK VGKVEKALDL FEEMKRAGCS
PTVYTYTELI KGLGKAGRVD EAYGFYKDML RDGLTPDVVF LNNLMNILGK VGRVEELTNV
FSEMGMWRCT PTVVSYNTVI KALFESKAHV SEVSSWFDKM KADSVSPSEF TYSILIDGYC
KTNRVEKALL LLEEMDEKGF PPCPAAYCSL INALGKAKRY EAANELFKEL KENFGNVSSR
VYAVMIKHFG KCGKLSEAVD LFNEMKNQGS GPDVYAYNAL MSGMVKAGMI NEANSLLRKM
EENGCRADIN SHNIILNGFA RTGVPRRAIE MFETIKHSGI KPDGVTYNTL LGCFAHAGMF
EEAARMMREM KDKGFEYDAI TYSSILDAVG NVDHEKDDVS SF
