PP239_ARATH
ID PP239_ARATH Reviewed; 659 AA.
AC Q9LSQ2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial;
DE AltName: Full=Protein PENTATRICOPEPTIDE REPEAT 40;
DE Flags: Precursor;
GN Name=PPR40; OrderedLocusNames=At3g16890; ORFNames=K14A17.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [4]
RP FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=18305213; DOI=10.1104/pp.107.111260;
RA Zsigmond L., Rigo G., Szarka A., Szekely G., Oetvoes K., Darula Z.,
RA Medzihradszky K.F., Koncz C., Koncz Z., Szabados L.;
RT "Arabidopsis PPR40 connects abiotic stress responses to mitochondrial
RT electron transport.";
RL Plant Physiol. 146:1721-1737(2008).
CC -!- FUNCTION: Required for the ubiquinol-cytochrome c oxidoreductase
CC activity of mitochondrial complex III. {ECO:0000269|PubMed:18305213}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:18305213}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB026636; BAA94973.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75880.1; -; Genomic_DNA.
DR RefSeq; NP_188314.1; NM_112565.2.
DR AlphaFoldDB; Q9LSQ2; -.
DR SMR; Q9LSQ2; -.
DR BioGRID; 6277; 8.
DR STRING; 3702.AT3G16890.1; -.
DR PaxDb; Q9LSQ2; -.
DR PRIDE; Q9LSQ2; -.
DR ProteomicsDB; 249184; -.
DR EnsemblPlants; AT3G16890.1; AT3G16890.1; AT3G16890.
DR GeneID; 820944; -.
DR Gramene; AT3G16890.1; AT3G16890.1; AT3G16890.
DR KEGG; ath:AT3G16890; -.
DR Araport; AT3G16890; -.
DR TAIR; locus:2086032; AT3G16890.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9LSQ2; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LSQ2; -.
DR PRO; PR:Q9LSQ2; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LSQ2; baseline and differential.
DR Genevisible; Q9LSQ2; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0042775; P:mitochondrial ATP synthesis coupled electron transport; IMP:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IMP:TAIR.
DR GO; GO:0006979; P:response to oxidative stress; IMP:TAIR.
DR GO; GO:0009651; P:response to salt stress; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..32
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 33..659
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g16890, mitochondrial"
FT /id="PRO_0000356098"
FT REPEAT 109..143
FT /note="PPR 1"
FT REPEAT 144..178
FT /note="PPR 2"
FT REPEAT 179..213
FT /note="PPR 3"
FT REPEAT 214..248
FT /note="PPR 4"
FT REPEAT 249..283
FT /note="PPR 5"
FT REPEAT 284..318
FT /note="PPR 6"
FT REPEAT 319..353
FT /note="PPR 7"
FT REPEAT 354..388
FT /note="PPR 8"
FT REPEAT 389..423
FT /note="PPR 9"
FT REPEAT 424..458
FT /note="PPR 10"
FT REPEAT 459..493
FT /note="PPR 11"
FT REPEAT 494..528
FT /note="PPR 12"
FT REPEAT 529..563
FT /note="PPR 13"
FT REPEAT 564..598
FT /note="PPR 14"
FT REPEAT 599..633
FT /note="PPR 15"
SQ SEQUENCE 659 AA; 74258 MW; B6DEC7A127EABED8 CRC64;
MRGFASSASR IATAAAASKS LNASTSVNPK LSKTLNSSGK PTNPLNQRYI SQVIERKDWF
LILNQEFTTH RIGLNTRFVI SVLQNQDNPL HSLRFYLWVS NFDPVYAKDQ SLKSVLGNAL
FRKGPLLLSM ELLKEIRDSG YRISDELMCV LIGSWGRLGL AKYCNDVFAQ ISFLGMKPST
RLYNAVIDAL VKSNSLDLAY LKFQQMRSDG CKPDRFTYNI LIHGVCKKGV VDEAIRLVKQ
MEQEGNRPNV FTYTILIDGF LIAGRVDEAL KQLEMMRVRK LNPNEATIRT FVHGIFRCLP
PCKAFEVLVG FMEKDSNLQR VGYDAVLYCL SNNSMAKETG QFLRKIGERG YIPDSSTFNA
AMSCLLKGHD LVETCRIFDG FVSRGVKPGF NGYLVLVQAL LNAQRFSEGD RYLKQMGVDG
LLSSVYSYNA VIDCLCKARR IENAAMFLTE MQDRGISPNL VTFNTFLSGY SVRGDVKKVH
GVLEKLLVHG FKPDVITFSL IINCLCRAKE IKDAFDCFKE MLEWGIEPNE ITYNILIRSC
CSTGDTDRSV KLFAKMKENG LSPDLYAYNA TIQSFCKMRK VKKAEELLKT MLRIGLKPDN
FTYSTLIKAL SESGRESEAR EMFSSIERHG CVPDSYTKRL VEELDLRKSG LSRETVSAS
