PP241_ARATH
ID PP241_ARATH Reviewed; 1440 AA.
AC Q5G1S8; B6VCZ6; Q9LV30;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-FEB-2011, sequence version 2.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g18110, chloroplastic;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1270;
DE Flags: Precursor;
GN Name=EMB1270; OrderedLocusNames=At3g18110; ORFNames=MRC8.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], AND FUNCTION.
RC STRAIN=cv. Columbia;
RX PubMed=15647901; DOI=10.1007/s00425-004-1452-x;
RA Cushing D.A., Forsthoefel N.R., Gestaut D.R., Vernon D.M.;
RT "Arabidopsis emb175 and other ppr knockout mutants reveal essential roles
RT for pentatricopeptide repeat (PPR) proteins in plant embryogenesis.";
RL Planta 221:424-436(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- FUNCTION: May play a role in embryogenesis.
CC {ECO:0000269|PubMed:15647901}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAW62966.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AY864351; AAW62966.1; ALT_SEQ; Genomic_DNA.
DR EMBL; FJ375310; ACJ11249.1; -; mRNA.
DR EMBL; AB020749; BAB02023.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76049.1; -; Genomic_DNA.
DR RefSeq; NP_188439.2; NM_112693.4.
DR AlphaFoldDB; Q5G1S8; -.
DR SMR; Q5G1S8; -.
DR STRING; 3702.AT3G18110.1; -.
DR PaxDb; Q5G1S8; -.
DR PRIDE; Q5G1S8; -.
DR ProteomicsDB; 248952; -.
DR EnsemblPlants; AT3G18110.1; AT3G18110.1; AT3G18110.
DR GeneID; 821336; -.
DR Gramene; AT3G18110.1; AT3G18110.1; AT3G18110.
DR KEGG; ath:AT3G18110; -.
DR Araport; AT3G18110; -.
DR TAIR; locus:2092712; AT3G18110.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_001756_0_0_1; -.
DR InParanoid; Q5G1S8; -.
DR OMA; YVVIQEL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q5G1S8; -.
DR PRO; PR:Q5G1S8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q5G1S8; baseline and differential.
DR Genevisible; Q5G1S8; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IDA:TAIR.
DR GO; GO:0031425; P:chloroplast RNA processing; IMP:TAIR.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 9.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 4.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 24.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..44
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 45..1440
FT /note="Pentatricopeptide repeat-containing protein
FT At3g18110, chloroplastic"
FT /id="PRO_0000356100"
FT REPEAT 224..258
FT /note="PPR 1"
FT REPEAT 259..295
FT /note="PPR 2"
FT REPEAT 296..330
FT /note="PPR 3"
FT REPEAT 331..365
FT /note="PPR 4"
FT REPEAT 366..400
FT /note="PPR 5"
FT REPEAT 401..431
FT /note="PPR 6"
FT REPEAT 437..471
FT /note="PPR 7"
FT REPEAT 472..506
FT /note="PPR 8"
FT REPEAT 507..541
FT /note="PPR 9"
FT REPEAT 542..572
FT /note="PPR 10"
FT REPEAT 608..638
FT /note="PPR 11"
FT REPEAT 643..678
FT /note="PPR 12"
FT REPEAT 680..714
FT /note="PPR 13"
FT REPEAT 715..749
FT /note="PPR 14"
FT REPEAT 751..785
FT /note="PPR 15"
FT REPEAT 786..820
FT /note="PPR 16"
FT REPEAT 821..855
FT /note="PPR 17"
FT REPEAT 856..890
FT /note="PPR 18"
FT REPEAT 891..925
FT /note="PPR 19"
FT REPEAT 926..960
FT /note="PPR 20"
FT REPEAT 961..995
FT /note="PPR 21"
FT REPEAT 996..1030
FT /note="PPR 22"
FT REPEAT 1031..1065
FT /note="PPR 23"
FT REPEAT 1066..1100
FT /note="PPR 24"
FT REPEAT 1101..1135
FT /note="PPR 25"
FT REGION 63..84
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1419..1440
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1440 AA; 162337 MW; 364887F23EF8B9BF CRC64;
MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY
DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET AVATRRRRVK KMNKVALIKA
KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW
LNLRHWHSPN ARMVAAILGV LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK
FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL
KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK DEMTYNTIIH MYGKQGQLDL
ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI
CGYAKAGKRE EAEDTFSCML RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT
PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL
SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA SQVFSDLRLS GCEASESVCK
SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ
SGRTPDLKTW NSLMSAYAQC GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE
LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP
DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY KSLISAFGKQ KCLEQAEQLF
EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS
GNPQEAEKVL SNLKDTEVEL TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW
TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV
ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK TLKACLWEMG SPFLPCKTRT
GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL
GGFVSPKKFS RLALLPDEMR ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
