PP244_ARATH
ID PP244_ARATH Reviewed; 565 AA.
AC Q9LT48; F4JES8; Q6NPS2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g20730;
GN Name=PCMP-E94; OrderedLocusNames=At3g20730; ORFNames=MOE17.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-565.
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB025629; BAB02480.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76417.2; -; Genomic_DNA.
DR EMBL; AK176813; BAD44576.1; -; mRNA.
DR EMBL; BT010745; AAR23715.1; -; mRNA.
DR RefSeq; NP_188709.2; NM_112964.2.
DR AlphaFoldDB; Q9LT48; -.
DR SMR; Q9LT48; -.
DR iPTMnet; Q9LT48; -.
DR PaxDb; Q9LT48; -.
DR PRIDE; Q9LT48; -.
DR EnsemblPlants; AT3G20730.1; AT3G20730.1; AT3G20730.
DR GeneID; 821621; -.
DR Gramene; AT3G20730.1; AT3G20730.1; AT3G20730.
DR KEGG; ath:AT3G20730; -.
DR Araport; AT3G20730; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9LT48; -.
DR OMA; AYVKCGS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LT48; -.
DR PRO; PR:Q9LT48; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LT48; baseline and differential.
DR Genevisible; Q9LT48; AT.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..565
FT /note="Pentatricopeptide repeat-containing protein
FT At3g20730"
FT /id="PRO_0000356103"
FT REPEAT 12..46
FT /note="PPR 1"
FT REPEAT 47..77
FT /note="PPR 2"
FT REPEAT 78..112
FT /note="PPR 3"
FT REPEAT 113..147
FT /note="PPR 4"
FT REPEAT 148..178
FT /note="PPR 5"
FT REPEAT 179..213
FT /note="PPR 6"
FT REPEAT 214..248
FT /note="PPR 7"
FT REPEAT 249..279
FT /note="PPR 8"
FT REPEAT 280..315
FT /note="PPR 9"
FT REPEAT 316..351
FT /note="PPR 10"
FT REPEAT 352..382
FT /note="PPR 11"
FT REPEAT 383..417
FT /note="PPR 12"
FT REPEAT 418..448
FT /note="PPR 13"
FT REPEAT 454..484
FT /note="PPR 14"
FT REGION 491..565
FT /note="Type E motif; degenerate"
SQ SEQUENCE 565 AA; 63115 MW; D934488371D31C40 CRC64;
MMLVVSENYL LSPSLYLKAL KLCSYQNVKK QLLLIHGNSI TNGFCSNLQL KDMLIDLYLK
QGDVKHARKL FDRISKRDVV SWTAMISRFS RCGYHPDALL LFKEMHREDV KANQFTYGSV
LKSCKDLGCL KEGMQIHGSV EKGNCAGNLI VRSALLSLYA RCGKMEEARL QFDSMKERDL
VSWNAMIDGY TANACADTSF SLFQLMLTEG KKPDCFTFGS LLRASIVVKC LEIVSELHGL
AIKLGFGRSS ALIRSLVNAY VKCGSLANAW KLHEGTKKRD LLSCTALITG FSQQNNCTSD
AFDIFKDMIR MKTKMDEVVV SSMLKICTTI ASVTIGRQIH GFALKSSQIR FDVALGNSLI
DMYAKSGEIE DAVLAFEEMK EKDVRSWTSL IAGYGRHGNF EKAIDLYNRM EHERIKPNDV
TFLSLLSACS HTGQTELGWK IYDTMINKHG IEAREEHLSC IIDMLARSGY LEEAYALIRS
KEGIVSLSSS TWGAFLDACR RHGNVQLSKV AATQLLSMEP RKPVNYINLA SVYAANGAWD
NALNTRKLMK ESGSCNKAPG YSLVY
