PP245_ARATH
ID PP245_ARATH Reviewed; 523 AA.
AC Q9LVF9; Q6DBE2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g21470;
GN Name=PCMP-E29; OrderedLocusNames=At3g21470; ORFNames=MIL23.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 44-523.
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAT71952.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB019232; BAB02341.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76513.1; -; Genomic_DNA.
DR EMBL; BT015080; AAT71952.1; ALT_INIT; mRNA.
DR EMBL; BT015911; AAU95447.1; -; mRNA.
DR RefSeq; NP_188784.3; NM_113042.4.
DR AlphaFoldDB; Q9LVF9; -.
DR SMR; Q9LVF9; -.
DR PaxDb; Q9LVF9; -.
DR PRIDE; Q9LVF9; -.
DR ProteomicsDB; 249186; -.
DR EnsemblPlants; AT3G21470.1; AT3G21470.1; AT3G21470.
DR GeneID; 821701; -.
DR Gramene; AT3G21470.1; AT3G21470.1; AT3G21470.
DR KEGG; ath:AT3G21470; -.
DR Araport; AT3G21470; -.
DR TAIR; locus:2089875; AT3G21470.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q9LVF9; -.
DR OMA; AIHGQCK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LVF9; -.
DR PRO; PR:Q9LVF9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LVF9; baseline and differential.
DR Genevisible; Q9LVF9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..523
FT /note="Pentatricopeptide repeat-containing protein
FT At3g21470"
FT /id="PRO_0000356104"
FT REPEAT 10..43
FT /note="PPR 1"
FT REPEAT 44..79
FT /note="PPR 2"
FT REPEAT 80..114
FT /note="PPR 3"
FT REPEAT 115..141
FT /note="PPR 4"
FT REPEAT 143..173
FT /note="PPR 5"
FT REPEAT 176..210
FT /note="PPR 6"
FT REPEAT 211..237
FT /note="PPR 7"
FT REPEAT 238..272
FT /note="PPR 8"
FT REPEAT 273..307
FT /note="PPR 9"
FT REPEAT 308..338
FT /note="PPR 10"
FT REPEAT 339..373
FT /note="PPR 11"
FT REPEAT 374..408
FT /note="PPR 12"
FT REPEAT 409..439
FT /note="PPR 13"
FT REGION 444..523
FT /note="Type E motif"
SQ SEQUENCE 523 AA; 58227 MW; B5EB0170BCFBCC95 CRC64;
MNLEEHLSLG EFHVSNLIKN HISRGSPIQA LVLYGGIRRR GVYFPGWVPL ILRACACVVP
RVVLGKLLHS ESIKFGVCSD VMVGSSLISM YGKCGCVVSA RKVFDEMPER NVATWNAMIG
GYMSNGDAVL ASGLFEEISV CRNTVTWIEM IKGYGKRIEI EKARELFERM PFELKNVKAW
SVMLGVYVNN RKMEDARKFF EDIPEKNAFV WSLMMSGYFR IGDVHEARAI FYRVFARDLV
IWNTLIAGYA QNGYSDDAID AFFNMQGEGY EPDAVTVSSI LSACAQSGRL DVGREVHSLI
NHRGIELNQF VSNALIDMYA KCGDLENATS VFESISVRSV ACCNSMISCL AIHGKGKEAL
EMFSTMESLD LKPDEITFIA VLTACVHGGF LMEGLKIFSE MKTQDVKPNV KHFGCLIHLL
GRSGKLKEAY RLVKEMHVKP NDTVLGALLG ACKVHMDTEM AEQVMKIIET AGSITNSYSE
NHLASISNLY AHTERWQTAE ALRVEMEKRG LEKSPGLSSL VLT
