PP247_ARATH
ID PP247_ARATH Reviewed; 619 AA.
AC Q6NQ83; Q9LJ99;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g22470, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g22470; ORFNames=F16J14.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP TYR-28.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB01462.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP000731; BAB01462.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002686; AEE76643.1; -; Genomic_DNA.
DR EMBL; BT010576; AAQ65199.1; -; mRNA.
DR EMBL; AK175328; BAD43091.1; -; mRNA.
DR RefSeq; NP_188886.1; NM_113146.2.
DR AlphaFoldDB; Q6NQ83; -.
DR SMR; Q6NQ83; -.
DR PaxDb; Q6NQ83; -.
DR PRIDE; Q6NQ83; -.
DR EnsemblPlants; AT3G22470.1; AT3G22470.1; AT3G22470.
DR GeneID; 821818; -.
DR Gramene; AT3G22470.1; AT3G22470.1; AT3G22470.
DR KEGG; ath:AT3G22470; -.
DR Araport; AT3G22470; -.
DR TAIR; locus:2077061; AT3G22470.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q6NQ83; -.
DR OMA; RDMITRD; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q6NQ83; -.
DR PRO; PR:Q6NQ83; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q6NQ83; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 4.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 15.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..28
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 29..619
FT /note="Pentatricopeptide repeat-containing protein
FT At3g22470, mitochondrial"
FT /id="PRO_0000356106"
FT REPEAT 69..103
FT /note="PPR 1"
FT REPEAT 104..138
FT /note="PPR 2"
FT REPEAT 139..173
FT /note="PPR 3"
FT REPEAT 174..208
FT /note="PPR 4"
FT REPEAT 209..243
FT /note="PPR 5"
FT REPEAT 244..278
FT /note="PPR 6"
FT REPEAT 279..313
FT /note="PPR 7"
FT REPEAT 314..348
FT /note="PPR 8"
FT REPEAT 349..383
FT /note="PPR 9"
FT REPEAT 384..418
FT /note="PPR 10"
FT REPEAT 419..453
FT /note="PPR 11"
FT REPEAT 454..488
FT /note="PPR 12"
FT REPEAT 489..523
FT /note="PPR 13"
FT REPEAT 524..558
FT /note="PPR 14"
FT REPEAT 559..593
FT /note="PPR 15"
SQ SEQUENCE 619 AA; 69104 MW; D00DF43517B770E8 CRC64;
MIQRLIPLNR KASNFTQILE KGTSLLHYSS ITEAKLSYKE RLRNGIVDIK VNDAIDLFES
MIQSRPLPTP IDFNRLCSAV ARTKQYDLVL GFCKGMELNG IEHDMYTMTI MINCYCRKKK
LLFAFSVLGR AWKLGYEPDT ITFSTLVNGF CLEGRVSEAV ALVDRMVEMK QRPDLVTVST
LINGLCLKGR VSEALVLIDR MVEYGFQPDE VTYGPVLNRL CKSGNSALAL DLFRKMEERN
IKASVVQYSI VIDSLCKDGS FDDALSLFNE MEMKGIKADV VTYSSLIGGL CNDGKWDDGA
KMLREMIGRN IIPDVVTFSA LIDVFVKEGK LLEAKELYNE MITRGIAPDT ITYNSLIDGF
CKENCLHEAN QMFDLMVSKG CEPDIVTYSI LINSYCKAKR VDDGMRLFRE ISSKGLIPNT
ITYNTLVLGF CQSGKLNAAK ELFQEMVSRG VPPSVVTYGI LLDGLCDNGE LNKALEIFEK
MQKSRMTLGI GIYNIIIHGM CNASKVDDAW SLFCSLSDKG VKPDVVTYNV MIGGLCKKGS
LSEADMLFRK MKEDGCTPDD FTYNILIRAH LGGSGLISSV ELIEEMKVCG FSADSSTIKM
VIDMLSDRRL DKSFLDMLS
