PP249_ARATH
ID PP249_ARATH Reviewed; 842 AA.
AC Q9LUJ2;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g22690;
GN Name=PCMP-H56; OrderedLocusNames=At3g22690; ORFNames=MWI23.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9LUJ2-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB022223; BAB01244.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76666.1; -; Genomic_DNA.
DR RefSeq; NP_001189950.1; NM_001203021.2. [Q9LUJ2-1]
DR AlphaFoldDB; Q9LUJ2; -.
DR SMR; Q9LUJ2; -.
DR STRING; 3702.AT3G22690.1; -.
DR PaxDb; Q9LUJ2; -.
DR PRIDE; Q9LUJ2; -.
DR EnsemblPlants; AT3G22690.2; AT3G22690.2; AT3G22690. [Q9LUJ2-1]
DR GeneID; 821840; -.
DR Gramene; AT3G22690.2; AT3G22690.2; AT3G22690. [Q9LUJ2-1]
DR KEGG; ath:AT3G22690; -.
DR Araport; AT3G22690; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9LUJ2; -.
DR OMA; CGKQEMA; -.
DR PhylomeDB; Q9LUJ2; -.
DR PRO; PR:Q9LUJ2; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LUJ2; baseline and differential.
DR Genevisible; Q9LUJ2; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..842
FT /note="Pentatricopeptide repeat-containing protein
FT At3g22690"
FT /id="PRO_0000356108"
FT REPEAT 98..132
FT /note="PPR 1"
FT REPEAT 133..167
FT /note="PPR 2"
FT REPEAT 168..202
FT /note="PPR 3"
FT REPEAT 203..234
FT /note="PPR 4"
FT REPEAT 235..269
FT /note="PPR 5"
FT REPEAT 270..300
FT /note="PPR 6"
FT REPEAT 301..335
FT /note="PPR 7"
FT REPEAT 336..370
FT /note="PPR 8"
FT REPEAT 371..401
FT /note="PPR 9"
FT REPEAT 402..436
FT /note="PPR 10"
FT REPEAT 437..463
FT /note="PPR 11"
FT REPEAT 469..503
FT /note="PPR 12"
FT REPEAT 504..534
FT /note="PPR 13"
FT REPEAT 535..569
FT /note="PPR 14"
FT REPEAT 570..605
FT /note="PPR 15"
FT REPEAT 606..636
FT /note="PPR 16"
FT REGION 641..716
FT /note="Type E motif"
FT REGION 717..747
FT /note="Type E(+) motif"
FT REGION 748..842
FT /note="Type DYW motif"
SQ SEQUENCE 842 AA; 93462 MW; 0FB98FF0719F946C CRC64;
MAMLGNVLHL SPMVLATTTT TKPSLLNQSK CTKATPSSLK NCKTIDELKM FHRSLTKQGL
DNDVSTITKL VARSCELGTR ESLSFAKEVF ENSESYGTCF MYNSLIRGYA SSGLCNEAIL
LFLRMMNSGI SPDKYTFPFG LSACAKSRAK GNGIQIHGLI VKMGYAKDLF VQNSLVHFYA
ECGELDSARK VFDEMSERNV VSWTSMICGY ARRDFAKDAV DLFFRMVRDE EVTPNSVTMV
CVISACAKLE DLETGEKVYA FIRNSGIEVN DLMVSALVDM YMKCNAIDVA KRLFDEYGAS
NLDLCNAMAS NYVRQGLTRE ALGVFNLMMD SGVRPDRISM LSAISSCSQL RNILWGKSCH
GYVLRNGFES WDNICNALID MYMKCHRQDT AFRIFDRMSN KTVVTWNSIV AGYVENGEVD
AAWETFETMP EKNIVSWNTI ISGLVQGSLF EEAIEVFCSM QSQEGVNADG VTMMSIASAC
GHLGALDLAK WIYYYIEKNG IQLDVRLGTT LVDMFSRCGD PESAMSIFNS LTNRDVSAWT
AAIGAMAMAG NAERAIELFD DMIEQGLKPD GVAFVGALTA CSHGGLVQQG KEIFYSMLKL
HGVSPEDVHY GCMVDLLGRA GLLEEAVQLI EDMPMEPNDV IWNSLLAACR VQGNVEMAAY
AAEKIQVLAP ERTGSYVLLS NVYASAGRWN DMAKVRLSMK EKGLRKPPGT SSIQIRGKTH
EFTSGDESHP EMPNIEAMLD EVSQRASHLG HVPDLSNVLM DVDEKEKIFM LSRHSEKLAM
AYGLISSNKG TTIRIVKNLR VCSDCHSFAK FASKVYNREI ILRDNNRFHY IRQGKCSCGD
FW
