PP250_ARATH
ID PP250_ARATH Reviewed; 842 AA.
AC Q9LS88;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g23020;
GN OrderedLocusNames=At3g23020; ORFNames=MXC7.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB026655; BAB02093.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76706.1; -; Genomic_DNA.
DR RefSeq; NP_188942.1; NM_113202.2.
DR AlphaFoldDB; Q9LS88; -.
DR SMR; Q9LS88; -.
DR STRING; 3702.AT3G23020.1; -.
DR PaxDb; Q9LS88; -.
DR PRIDE; Q9LS88; -.
DR ProteomicsDB; 249100; -.
DR EnsemblPlants; AT3G23020.1; AT3G23020.1; AT3G23020.
DR GeneID; 821876; -.
DR Gramene; AT3G23020.1; AT3G23020.1; AT3G23020.
DR KEGG; ath:AT3G23020; -.
DR Araport; AT3G23020; -.
DR TAIR; locus:2094573; AT3G23020.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_011648_1_0_1; -.
DR InParanoid; Q9LS88; -.
DR OMA; CVCNVMI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LS88; -.
DR PRO; PR:Q9LS88; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LS88; baseline and differential.
DR Genevisible; Q9LS88; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:1904821; P:chloroplast disassembly; IGI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IGI:TAIR.
DR GO; GO:0010343; P:singlet oxygen-mediated programmed cell death; IGI:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13041; PPR_2; 6.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 12.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..842
FT /note="Pentatricopeptide repeat-containing protein
FT At3g23020"
FT /id="PRO_0000356109"
FT REPEAT 186..220
FT /note="PPR 1"
FT REPEAT 221..255
FT /note="PPR 2"
FT REPEAT 256..290
FT /note="PPR 3"
FT REPEAT 297..331
FT /note="PPR 4"
FT REPEAT 332..362
FT /note="PPR 5"
FT REPEAT 366..400
FT /note="PPR 6"
FT REPEAT 401..435
FT /note="PPR 7"
FT REPEAT 436..470
FT /note="PPR 8"
FT REPEAT 474..500
FT /note="PPR 9"
FT REPEAT 504..538
FT /note="PPR 10"
FT REPEAT 539..573
FT /note="PPR 11"
FT REPEAT 574..608
FT /note="PPR 12"
FT REPEAT 609..643
FT /note="PPR 13"
FT REPEAT 644..674
FT /note="PPR 14"
FT REPEAT 682..712
FT /note="PPR 15"
FT REPEAT 716..750
FT /note="PPR 16"
FT REPEAT 751..785
FT /note="PPR 17"
FT REPEAT 786..820
FT /note="PPR 18"
FT REGION 40..61
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 842 AA; 95319 MW; B2CCBFE02007FFD2 CRC64;
MLLNLRLDGS SLHVLCSTKT LPISSPLDKF PSFKKLKQNY VPGTHESDKG PQRSTRNGDR
GCGTVAHEVV AGKNLLLVNP SNGCVGKSGI IDGFVDKRSK DARFGGNGLV SEVHTKCSTK
RLSYGGCIPA ILEALDSIED VEDALSPWAE RLSNKERTII LKEQIHWERA VEIFEWFKSK
GCYELNVIHY NIMLRILGKA CKWRYVQSLW DEMIRKGIKP INSTYGTLID VYSKGGLKVH
ALCWLGKMSK IGMQPDEVTT GIVLQMYKKA REFQKAEEFF KKWSCDENKA DSHVCLSSYT
YNTMIDTYGK SGQIKEASET FKRMLEEGIV PTTVTFNTMI HIYGNNGQLG EVTSLMKTMK
LHCAPDTRTY NILISLHTKN NDIERAGAYF KEMKDDGLKP DPVSYRTLLY AFSIRHMVEE
AEGLIAEMDD DNVEIDEYTQ SALTRMYVEA EMLEKSWSWF KRFHVAGNMS SEGYSANIDA
YGERGYLSEA ERVFICCQEV NKRTVIEYNV MIKAYGISKS CEKACELFES MMSYGVTPDK
CTYNTLVQIL ASADMPHKGR CYLEKMRETG YVSDCIPYCA VISSFVKLGQ LNMAEEVYKE
MVEYNIEPDV VVYGVLINAF ADTGNVQQAM SYVEAMKEAG IPGNSVIYNS LIKLYTKVGY
LDEAEAIYRK LLQSCNKTQY PDVYTSNCMI NLYSERSMVR KAEAIFDSMK QRGEANEFTF
AMMLCMYKKN GRFEEATQIA KQMREMKILT DPLSYNSVLG LFALDGRFKE AVETFKEMVS
SGIQPDDSTF KSLGTILMKL GMSKKAVRKI EEIRKKEIKR GLELWISTLS SLVGIGDCVD
EL
