PP251_ARATH
ID PP251_ARATH Reviewed; 715 AA.
AC Q9LW63;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330;
GN Name=PCMP-H32; OrderedLocusNames=At3g23330; ORFNames=MLM24.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB015474; BAB02277.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76753.1; -; Genomic_DNA.
DR RefSeq; NP_188975.3; NM_113236.4.
DR AlphaFoldDB; Q9LW63; -.
DR SMR; Q9LW63; -.
DR STRING; 3702.AT3G23330.1; -.
DR PaxDb; Q9LW63; -.
DR PRIDE; Q9LW63; -.
DR ProteomicsDB; 249187; -.
DR EnsemblPlants; AT3G23330.1; AT3G23330.1; AT3G23330.
DR GeneID; 821914; -.
DR Gramene; AT3G23330.1; AT3G23330.1; AT3G23330.
DR KEGG; ath:AT3G23330; -.
DR Araport; AT3G23330; -.
DR TAIR; locus:2090910; AT3G23330.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9LW63; -.
DR OMA; KCGNIKM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LW63; -.
DR PRO; PR:Q9LW63; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LW63; baseline and differential.
DR Genevisible; Q9LW63; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..715
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g23330"
FT /id="PRO_0000356110"
FT REPEAT 38..68
FT /note="PPR 1"
FT REPEAT 69..103
FT /note="PPR 2"
FT REPEAT 104..138
FT /note="PPR 3"
FT REPEAT 139..172
FT /note="PPR 4"
FT REPEAT 206..240
FT /note="PPR 5"
FT REPEAT 241..275
FT /note="PPR 6"
FT REPEAT 276..306
FT /note="PPR 7"
FT REPEAT 307..341
FT /note="PPR 8"
FT REPEAT 342..376
FT /note="PPR 9"
FT REPEAT 377..407
FT /note="PPR 10"
FT REPEAT 408..442
FT /note="PPR 11"
FT REPEAT 443..473
FT /note="PPR 12"
FT REPEAT 479..509
FT /note="PPR 13"
FT REGION 514..589
FT /note="Type E motif"
FT REGION 590..620
FT /note="Type E(+) motif"
FT REGION 621..715
FT /note="Type DYW motif"
SQ SEQUENCE 715 AA; 80059 MW; F94A1BCA3DFFA0F2 CRC64;
MSSSKALIKT LIKNPTRIKS KSQAKQLHAQ FIRTQSLSHT SASIVISIYT NLKLLHEALL
LFKTLKSPPV LAWKSVIRCF TDQSLFSKAL ASFVEMRASG RCPDHNVFPS VLKSCTMMMD
LRFGESVHGF IVRLGMDCDL YTGNALMNMY AKLLGMGSKI SVGNVFDEMP QRTSNSGDED
VKAETCIMPF GIDSVRRVFE VMPRKDVVSY NTIIAGYAQS GMYEDALRMV REMGTTDLKP
DSFTLSSVLP IFSEYVDVIK GKEIHGYVIR KGIDSDVYIG SSLVDMYAKS ARIEDSERVF
SRLYCRDGIS WNSLVAGYVQ NGRYNEALRL FRQMVTAKVK PGAVAFSSVI PACAHLATLH
LGKQLHGYVL RGGFGSNIFI ASALVDMYSK CGNIKAARKI FDRMNVLDEV SWTAIIMGHA
LHGHGHEAVS LFEEMKRQGV KPNQVAFVAV LTACSHVGLV DEAWGYFNSM TKVYGLNQEL
EHYAAVADLL GRAGKLEEAY NFISKMCVEP TGSVWSTLLS SCSVHKNLEL AEKVAEKIFT
VDSENMGAYV LMCNMYASNG RWKEMAKLRL RMRKKGLRKK PACSWIEMKN KTHGFVSGDR
SHPSMDKINE FLKAVMEQME KEGYVADTSG VLHDVDEEHK RELLFGHSER LAVAFGIINT
EPGTTIRVTK NIRICTDCHV AIKFISKITE REIIVRDNSR FHHFNRGNCS CGDYW
