ID   PP254_ARATH             Reviewed;         379 AA.
AC   Q9LSF5;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   25-MAY-2022, entry version 99.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At3g25210, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At3g25210; ORFNames=MJL12.16;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA   Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT   features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT   clones.";
RL   DNA Res. 7:131-135(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 15-379.
RC   STRAIN=cv. Columbia;
RX   PubMed=14993207; DOI=10.1101/gr.1515604;
RA   Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA   Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA   Weissenbach J., Salanoubat M.;
RT   "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT   combined approach to evaluate and improve Arabidopsis genome annotation.";
RL   Genome Res. 14:406-413(2004).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AB026647; BAB02080.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE76993.1; -; Genomic_DNA.
DR   EMBL; BX824176; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; NP_189158.3; NM_113427.5.
DR   AlphaFoldDB; Q9LSF5; -.
DR   SMR; Q9LSF5; -.
DR   STRING; 3702.AT3G25210.1; -.
DR   PaxDb; Q9LSF5; -.
DR   PRIDE; Q9LSF5; -.
DR   ProteomicsDB; 249102; -.
DR   EnsemblPlants; AT3G25210.1; AT3G25210.1; AT3G25210.
DR   GeneID; 822114; -.
DR   Gramene; AT3G25210.1; AT3G25210.1; AT3G25210.
DR   KEGG; ath:AT3G25210; -.
DR   Araport; AT3G25210; -.
DR   TAIR; locus:2090220; AT3G25210.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_040105_1_0_1; -.
DR   InParanoid; Q9LSF5; -.
DR   OMA; VIAGACE; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LSF5; -.
DR   PRO; PR:Q9LSF5; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LSF5; baseline and differential.
DR   Genevisible; Q9LSF5; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF13041; PPR_2; 2.
DR   TIGRFAMs; TIGR00756; PPR; 5.
DR   PROSITE; PS51375; PPR; 6.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..?
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           ?..379
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At3g25210, mitochondrial"
FT                   /id="PRO_0000356113"
FT   REPEAT          142..177
FT                   /note="PPR 1"
FT   REPEAT          179..221
FT                   /note="PPR 2"
FT   REPEAT          222..256
FT                   /note="PPR 3"
FT   REPEAT          257..291
FT                   /note="PPR 4"
FT   REPEAT          292..326
FT                   /note="PPR 5"
FT   REPEAT          327..361
FT                   /note="PPR 6"
FT   CONFLICT        143
FT                   /note="V -> F (in Ref. 3)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        200
FT                   /note="C -> F (in Ref. 3)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        375
FT                   /note="F -> L (in Ref. 3)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   379 AA;  43247 MW;  B67E7218FBED5C7A CRC64;
     MSATLRRLIL LTSTNRSRNL SPPFLSTAVN HLSLSFSSVS SSPESHTSPS RIRTRTPLET
     QFETWIQNLK PGFTNSDVVI ALRAQSDPDL ALDIFRWTAQ QRGYKHNHEA YHTMIKQAIT
     GKRNNFVETL IEEVIAGACE MSVPLYNCII RFCCGRKFLF NRAFDVYNKM LRSDDSKPDL
     ETYTLLLSSL LKRFNKLNVC YVYLHAVRSL TKQMKSNGVI PDTFVLNMII KAYAKCLEVD
     EAIRVFKEMA LYGSEPNAYT YSYLVKGVCE KGRVGQGLGF YKEMQVKGMV PNGSCYMVLI
     CSLSMERRLD EAVEVVYDML ANSLSPDMLT YNTVLTELCR GGRGSEALEM VEEWKKRDPV
     MGERNYRTLM DEVYFLNKG