PP255_ARATH
ID PP255_ARATH Reviewed; 701 AA.
AC Q9LU94;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g25970;
GN Name=PCMP-E46; OrderedLocusNames=At3g25970; ORFNames=MPE11.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB01060.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB023041; BAB01060.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE77096.1; -; Genomic_DNA.
DR RefSeq; NP_189226.2; NM_113501.3.
DR AlphaFoldDB; Q9LU94; -.
DR SMR; Q9LU94; -.
DR PaxDb; Q9LU94; -.
DR PRIDE; Q9LU94; -.
DR ProteomicsDB; 249103; -.
DR EnsemblPlants; AT3G25970.1; AT3G25970.1; AT3G25970.
DR GeneID; 822194; -.
DR Gramene; AT3G25970.1; AT3G25970.1; AT3G25970.
DR KEGG; ath:AT3G25970; -.
DR Araport; AT3G25970; -.
DR TAIR; locus:2092100; AT3G25970.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9LU94; -.
DR OMA; AYSQCGS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LU94; -.
DR PRO; PR:Q9LU94; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LU94; baseline and differential.
DR Genevisible; Q9LU94; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 16.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..701
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g25970"
FT /id="PRO_0000356114"
FT REPEAT 34..64
FT /note="PPR 1"
FT REPEAT 65..99
FT /note="PPR 2"
FT REPEAT 100..134
FT /note="PPR 3"
FT REPEAT 135..165
FT /note="PPR 4"
FT REPEAT 166..200
FT /note="PPR 5"
FT REPEAT 202..236
FT /note="PPR 6"
FT REPEAT 237..267
FT /note="PPR 7"
FT REPEAT 269..303
FT /note="PPR 8"
FT REPEAT 304..338
FT /note="PPR 9"
FT REPEAT 339..371
FT /note="PPR 10"
FT REPEAT 372..406
FT /note="PPR 11"
FT REPEAT 407..441
FT /note="PPR 12"
FT REPEAT 442..472
FT /note="PPR 13"
FT REPEAT 474..508
FT /note="PPR 14"
FT REPEAT 509..539
FT /note="PPR 15"
FT REPEAT 545..575
FT /note="PPR 16"
FT REGION 580..655
FT /note="Type E motif"
FT REGION 656..686
FT /note="Type E(+) motif"
SQ SEQUENCE 701 AA; 78182 MW; 206BFC2BC54CB688 CRC64;
MKALLASLLE SSLNSFQKLS LTHCYAIKCG SISDIYVSNR ILDSYIKFGF LGYANMLFDE
MPKRDSVSWN TMISGYTSCG KLEDAWCLFT CMKRSGSDVD GYSFSRLLKG IASVKRFDLG
EQVHGLVIKG GYECNVYVGS SLVDMYAKCE RVEDAFEAFK EISEPNSVSW NALIAGFVQV
RDIKTAFWLL GLMEMKAAVT MDAGTFAPLL TLLDDPMFCN LLKQVHAKVL KLGLQHEITI
CNAMISSYAD CGSVSDAKRV FDGLGGSKDL ISWNSMIAGF SKHELKESAF ELFIQMQRHW
VETDIYTYTG LLSACSGEEH QIFGKSLHGM VIKKGLEQVT SATNALISMY IQFPTGTMED
ALSLFESLKS KDLISWNSII TGFAQKGLSE DAVKFFSYLR SSEIKVDDYA FSALLRSCSD
LATLQLGQQI HALATKSGFV SNEFVISSLI VMYSKCGIIE SARKCFQQIS SKHSTVAWNA
MILGYAQHGL GQVSLDLFSQ MCNQNVKLDH VTFTAILTAC SHTGLIQEGL ELLNLMEPVY
KIQPRMEHYA AAVDLLGRAG LVNKAKELIE SMPLNPDPMV LKTFLGVCRA CGEIEMATQV
ANHLLEIEPE DHFTYVSLSH MYSDLKKWEE KASVKKMMKE RGVKKVPGWS WIEIRNQVKA
FNAEDRSNPL CQDIYMMIKD LTQEMQWLDS DNGVDADSLH A
