PP257_ARATH
ID PP257_ARATH Reviewed; 455 AA.
AC Q38959;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g26630, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-A6; Synonyms=ORF9, PCMP-A1; OrderedLocusNames=At3g26630;
GN ORFNames=MFE16.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=8932388; DOI=10.1093/nar/24.21.4313;
RA Quigley F., Dao P., Cottet A., Mache R.;
RT "Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome
RT III.";
RL Nucleic Acids Res. 24:4313-4318(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-A subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; X97487; CAA66119.1; -; mRNA.
DR EMBL; X98130; CAA66814.1; -; Genomic_DNA.
DR EMBL; AB026648; BAB01728.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77189.1; -; Genomic_DNA.
DR EMBL; AY099658; AAM20509.1; -; mRNA.
DR EMBL; BT000240; AAN15559.1; -; mRNA.
DR RefSeq; NP_189297.1; NM_113574.3.
DR AlphaFoldDB; Q38959; -.
DR SMR; Q38959; -.
DR PaxDb; Q38959; -.
DR PRIDE; Q38959; -.
DR ProteomicsDB; 249105; -.
DR EnsemblPlants; AT3G26630.1; AT3G26630.1; AT3G26630.
DR GeneID; 822275; -.
DR Gramene; AT3G26630.1; AT3G26630.1; AT3G26630.
DR KEGG; ath:AT3G26630; -.
DR Araport; AT3G26630; -.
DR TAIR; locus:2090857; AT3G26630.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR OMA; TFTWNLM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q38959; -.
DR PRO; PR:Q38959; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q38959; baseline and differential.
DR Genevisible; Q38959; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..19
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 20..455
FT /note="Pentatricopeptide repeat-containing protein
FT At3g26630, chloroplastic"
FT /id="PRO_0000356116"
FT REPEAT 51..81
FT /note="PPR 1"
FT REPEAT 82..117
FT /note="PPR 2"
FT REPEAT 118..152
FT /note="PPR 3"
FT REPEAT 153..187
FT /note="PPR 4"
FT REPEAT 188..214
FT /note="PPR 5"
FT REPEAT 215..249
FT /note="PPR 6"
FT REPEAT 250..284
FT /note="PPR 7"
FT REPEAT 285..315
FT /note="PPR 8"
FT REPEAT 316..350
FT /note="PPR 9"
FT REPEAT 352..387
FT /note="PPR 10"
FT REPEAT 388..418
FT /note="PPR 11"
SQ SEQUENCE 455 AA; 51224 MW; 748CC44D821A8C75 CRC64;
MAAPSPSSPP NLLSPPPFRS PEASYFLRTC SNFSQLKQIH TKIIKHNLTN DQLLVRQLIS
VSSSFGETQY ASLVFNQLQS PSTFTWNLMI RSLSVNHKPR EALLLFILMM ISHQSQFDKF
TFPFVIKACL ASSSIRLGTQ VHGLAIKAGF FNDVFFQNTL MDLYFKCGKP DSGRKVFDKM
PGRSIVSWTT MLYGLVSNSQ LDSAEIVFNQ MPMRNVVSWT AMITAYVKNR RPDEAFQLFR
RMQVDDVKPN EFTIVNLLQA STQLGSLSMG RWVHDYAHKN GFVLDCFLGT ALIDMYSKCG
SLQDARKVFD VMQGKSLATW NSMITSLGVH GCGEEALSLF EEMEEEASVE PDAITFVGVL
SACANTGNVK DGLRYFTRMI QVYGISPIRE HNACMIQLLE QALEVEKASN LVESMDSDPD
FNSSFGNEYT DGMNETNETP SQHQIMFTKW DTGRF
