PP258_ARATH
ID PP258_ARATH Reviewed; 659 AA.
AC Q9LW32; Q0WR18;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g26782, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H34; OrderedLocusNames=At3g26782; ORFNames=MDJ14.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB016889; BAB01225.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77215.1; -; Genomic_DNA.
DR EMBL; AK228506; BAF00431.1; -; mRNA.
DR RefSeq; NP_001078212.1; NM_001084743.3.
DR AlphaFoldDB; Q9LW32; -.
DR SMR; Q9LW32; -.
DR PaxDb; Q9LW32; -.
DR PRIDE; Q9LW32; -.
DR ProteomicsDB; 249106; -.
DR EnsemblPlants; AT3G26782.1; AT3G26782.1; AT3G26782.
DR GeneID; 5008030; -.
DR Gramene; AT3G26782.1; AT3G26782.1; AT3G26782.
DR KEGG; ath:AT3G26782; -.
DR Araport; AT3G26782; -.
DR TAIR; locus:4010713776; AT3G26782.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9LW32; -.
DR OMA; HMYHHCS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LW32; -.
DR PRO; PR:Q9LW32; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LW32; baseline and differential.
DR Genevisible; Q9LW32; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..24
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 25..659
FT /note="Pentatricopeptide repeat-containing protein
FT At3g26782, mitochondrial"
FT /id="PRO_0000356117"
FT REPEAT 40..74
FT /note="PPR 1"
FT REPEAT 75..109
FT /note="PPR 2"
FT REPEAT 110..144
FT /note="PPR 3"
FT REPEAT 145..171
FT /note="PPR 4"
FT REPEAT 182..216
FT /note="PPR 5"
FT REPEAT 217..249
FT /note="PPR 6"
FT REPEAT 250..284
FT /note="PPR 7"
FT REPEAT 286..320
FT /note="PPR 8"
FT REPEAT 321..351
FT /note="PPR 9"
FT REPEAT 352..386
FT /note="PPR 10"
FT REPEAT 387..422
FT /note="PPR 11"
FT REPEAT 423..453
FT /note="PPR 12"
FT REGION 458..533
FT /note="Type E motif"
FT REGION 534..564
FT /note="Type E(+) motif"
FT REGION 565..659
FT /note="Type DYW motif"
FT CONFLICT 141
FT /note="N -> D (in Ref. 3; BAF00431)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 659 AA; 73766 MW; D7AFD5CECCDCA694 CRC64;
MKVRSKKALF CSVSRLLHTE RHTERQNLTT LFNRYVDKTD VFSWNSVIAD LARSGDSAEA
LLAFSSMRKL SLYPTRSSFP CAIKACSSLF DIFSGKQTHQ QAFVFGYQSD IFVSSALIVM
YSTCGKLEDA RKVFDEIPKR NIVSWTSMIR GYDLNGNALD AVSLFKDLLV DENDDDDAMF
LDSMGLVSVI SACSRVPAKG LTESIHSFVI KRGFDRGVSV GNTLLDAYAK GGEGGVAVAR
KIFDQIVDKD RVSYNSIMSV YAQSGMSNEA FEVFRRLVKN KVVTFNAITL STVLLAVSHS
GALRIGKCIH DQVIRMGLED DVIVGTSIID MYCKCGRVET ARKAFDRMKN KNVRSWTAMI
AGYGMHGHAA KALELFPAMI DSGVRPNYIT FVSVLAACSH AGLHVEGWRW FNAMKGRFGV
EPGLEHYGCM VDLLGRAGFL QKAYDLIQRM KMKPDSIIWS SLLAACRIHK NVELAEISVA
RLFELDSSNC GYYMLLSHIY ADAGRWKDVE RVRMIMKNRG LVKPPGFSLL ELNGEVHVFL
IGDEEHPQRE KIYEFLAELN RKLLEAGYVS NTSSVCHDVD EEEKEMTLRV HSEKLAIAFG
IMNTVPGSTV NVVKNLRVCS DCHNVIKLIS KIVDREFVVR DAKRFHHFKD GGCSCGDYW
