ID   PP259_ARATH             Reviewed;         504 AA.
AC   Q9LJJ1;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   03-AUG-2022, entry version 100.
DE   RecName: Full=Putative pentatricopeptide repeat-containing protein At3g28640;
GN   Name=PCMP-E79; OrderedLocusNames=At3g28640; ORFNames=MZN14.11;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA   Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT   features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT   clones.";
RL   DNA Res. 7:131-135(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AP000420; BAB02180.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE77469.1; -; Genomic_DNA.
DR   RefSeq; NP_189505.2; NM_113784.2.
DR   AlphaFoldDB; Q9LJJ1; -.
DR   SMR; Q9LJJ1; -.
DR   STRING; 3702.AT3G28640.1; -.
DR   PaxDb; Q9LJJ1; -.
DR   PRIDE; Q9LJJ1; -.
DR   ProteomicsDB; 249189; -.
DR   EnsemblPlants; AT3G28640.1; AT3G28640.1; AT3G28640.
DR   GeneID; 822494; -.
DR   Gramene; AT3G28640.1; AT3G28640.1; AT3G28640.
DR   KEGG; ath:AT3G28640; -.
DR   Araport; AT3G28640; -.
DR   TAIR; locus:2095472; AT3G28640.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_0_6_1; -.
DR   InParanoid; Q9LJJ1; -.
DR   OMA; HEHYSCV; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LJJ1; -.
DR   PRO; PR:Q9LJJ1; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LJJ1; baseline and differential.
DR   Genevisible; Q9LJJ1; AT.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR045215; PPR_prot_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR24015; PTHR24015; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   TIGRFAMs; TIGR00756; PPR; 3.
DR   PROSITE; PS51375; PPR; 9.
PE   3: Inferred from homology;
KW   Reference proteome; Repeat.
FT   CHAIN           1..504
FT                   /note="Putative pentatricopeptide repeat-containing protein
FT                   At3g28640"
FT                   /id="PRO_0000356118"
FT   REPEAT          77..107
FT                   /note="PPR 1"
FT   REPEAT          115..149
FT                   /note="PPR 2"
FT   REPEAT          151..181
FT                   /note="PPR 3"
FT   REPEAT          182..216
FT                   /note="PPR 4"
FT   REPEAT          217..251
FT                   /note="PPR 5"
FT   REPEAT          253..287
FT                   /note="PPR 6"
FT   REPEAT          288..319
FT                   /note="PPR 7"
FT   REPEAT          320..350
FT                   /note="PPR 8"
FT   REPEAT          356..390
FT                   /note="PPR 9"
FT   REGION          391..470
FT                   /note="Type E motif"
FT   REGION          471..501
FT                   /note="Type E(+) motif"
SQ   SEQUENCE   504 AA;  56568 MW;  0A8CF5C32134C5E2 CRC64;
     MSVVSSFHQS WKSLILASQR CNTVKQIKST HSLFIIHGLH RNTYAISKLL TAFLHLPNLN
     KHFHYASSIF DSIEIPNSFV YDTMIRICSR SSQPHLGLRY FLLMVKEEEE DIAPSYLTFH
     FLIVACLKAC FFSVGKQIHC WVVKNGVFLS DSHVQTGVLR IYVEDKLLLD ARKVFDEIPQ
     PDVVKWDVLM NGYVRCGLGS EGLEVFREML VKGLEPDEFS VTTALTACAQ VGALAQGKWI
     HEFVKKKSWI ESDVFVGTAL VDMYAKCGCI ETAVEVFKKL TRRNVFSWAA LIGGYAAYGY
     AKKAMTCLER LEREDGIKPD SVVLLGVLAA CAHGGFLEEG RSMLENMEAR YEITPKHEHY
     SCIVDLMCRA GRLDDALNLI EKMPMKPLAS VWGALLNGCR THKNVELGEL AVKNLLDLEK
     GNVEEEEAAL VQLSNIYFSV QRNPEASKVR GMIEQRGVRK TPGWSVLEVD GNVTKFVSGD
     VSHPNLLQIH TVIHLLSVDA LQIL