PP260_ARATH
ID PP260_ARATH Reviewed; 504 AA.
AC Q9LJI9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g28660;
GN Name=PCMP-E80; OrderedLocusNames=At3g28660; ORFNames=MZN14.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP000420; BAB02182.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77471.1; -; Genomic_DNA.
DR EMBL; AY091065; AAM13885.1; -; mRNA.
DR EMBL; BT000982; AAN41382.1; -; mRNA.
DR RefSeq; NP_189507.2; NM_113786.4.
DR AlphaFoldDB; Q9LJI9; -.
DR SMR; Q9LJI9; -.
DR STRING; 3702.AT3G28660.1; -.
DR PaxDb; Q9LJI9; -.
DR PRIDE; Q9LJI9; -.
DR ProteomicsDB; 249190; -.
DR EnsemblPlants; AT3G28660.1; AT3G28660.1; AT3G28660.
DR GeneID; 822496; -.
DR Gramene; AT3G28660.1; AT3G28660.1; AT3G28660.
DR KEGG; ath:AT3G28660; -.
DR Araport; AT3G28660; -.
DR TAIR; locus:2095487; AT3G28660.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9LJI9; -.
DR OMA; RQIKSTH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LJI9; -.
DR PRO; PR:Q9LJI9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LJI9; baseline and differential.
DR Genevisible; Q9LJI9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..504
FT /note="Pentatricopeptide repeat-containing protein
FT At3g28660"
FT /id="PRO_0000356119"
FT REPEAT 77..107
FT /note="PPR 1"
FT REPEAT 115..149
FT /note="PPR 2"
FT REPEAT 151..181
FT /note="PPR 3"
FT REPEAT 182..216
FT /note="PPR 4"
FT REPEAT 217..251
FT /note="PPR 5"
FT REPEAT 253..287
FT /note="PPR 6"
FT REPEAT 288..319
FT /note="PPR 7"
FT REPEAT 320..350
FT /note="PPR 8"
FT REPEAT 356..390
FT /note="PPR 9"
FT REGION 391..470
FT /note="Type E motif"
FT REGION 471..501
FT /note="Type E(+) motif"
SQ SEQUENCE 504 AA; 56646 MW; 8B020BF225DCB9FD CRC64;
MSVVSSFHQS WKSLILASQR CNTVKQIKST HSLFIIHGLH RNTYAISKLL TAFLHLPNLN
KHFHYASSIF DSIEIPNSFV YDTMIRICSR SSQPHLGLRY FLLMVKEEEE DITPSYLTFH
FLIVACLKAC FFSVGKQIHC WVVKNGVFLS DGHVQTGVLR IYVEDKLLFD ARKVFDEIPQ
PDVVKWDVLM NGYVRCGLGS EGLEVFKEML VRGIEPDEFS VTTALTACAQ VGALAQGKWI
HEFVKKKRWI ESDVFVGTAL VDMYAKCGCI ETAVEVFEKL TRRNVFSWAA LIGGYAAYGY
AKKATTCLDR IEREDGIKPD SVVLLGVLAA CAHGGFLEEG RTMLENMEAR YGITPKHEHY
SCIVDLMCRA GRLDDALDLI EKMPMKPLAS VWGALLNGCR THKNVELGEL AVQNLLDLEK
GNVEEEEAAL VQLSNIYFSV QRNPEAFKVR GMIEQRGIRK TPGWSLLEVD GIVTKFVSGD
VSHPNLLQIH TLIHLLSVDA SQIL
