PP262_ARATH
ID PP262_ARATH Reviewed; 540 AA.
AC Q84J46; A0A1I9LLR0; Q9LHJ5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g29290;
DE AltName: Full=Protein EMBRYO DEFECTIVE 2076;
GN Name=EMB2076; OrderedLocusNames=At3g29290; ORFNames=MMF24.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB03125.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP002045; BAB03125.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002686; AEE77563.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63516.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63517.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63518.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63519.1; -; Genomic_DNA.
DR EMBL; BT004061; AAO42091.1; -; mRNA.
DR EMBL; BT005140; AAO50673.1; -; mRNA.
DR RefSeq; NP_001325599.1; NM_001339017.1.
DR RefSeq; NP_001325600.1; NM_001339018.1.
DR RefSeq; NP_001325601.1; NM_001339019.1.
DR RefSeq; NP_001325602.1; NM_001339020.1.
DR RefSeq; NP_189575.2; NM_113854.5.
DR AlphaFoldDB; Q84J46; -.
DR SMR; Q84J46; -.
DR STRING; 3702.AT3G29290.1; -.
DR iPTMnet; Q84J46; -.
DR PaxDb; Q84J46; -.
DR PRIDE; Q84J46; -.
DR ProteomicsDB; 249192; -.
DR EnsemblPlants; AT3G29290.1; AT3G29290.1; AT3G29290.
DR EnsemblPlants; AT3G29290.2; AT3G29290.2; AT3G29290.
DR EnsemblPlants; AT3G29290.3; AT3G29290.3; AT3G29290.
DR EnsemblPlants; AT3G29290.4; AT3G29290.4; AT3G29290.
DR EnsemblPlants; AT3G29290.5; AT3G29290.5; AT3G29290.
DR GeneID; 822586; -.
DR Gramene; AT3G29290.1; AT3G29290.1; AT3G29290.
DR Gramene; AT3G29290.2; AT3G29290.2; AT3G29290.
DR Gramene; AT3G29290.3; AT3G29290.3; AT3G29290.
DR Gramene; AT3G29290.4; AT3G29290.4; AT3G29290.
DR Gramene; AT3G29290.5; AT3G29290.5; AT3G29290.
DR KEGG; ath:AT3G29290; -.
DR Araport; AT3G29290; -.
DR TAIR; locus:2091286; AT3G29290.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_10_2_1; -.
DR InParanoid; Q84J46; -.
DR OMA; LLWMMER; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q84J46; -.
DR PRO; PR:Q84J46; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q84J46; baseline and differential.
DR Genevisible; Q84J46; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..540
FT /note="Pentatricopeptide repeat-containing protein
FT At3g29290"
FT /id="PRO_0000356121"
FT REPEAT 106..140
FT /note="PPR 1"
FT REPEAT 141..175
FT /note="PPR 2"
FT REPEAT 177..205
FT /note="PPR 3"
FT REPEAT 213..247
FT /note="PPR 4"
FT REPEAT 248..282
FT /note="PPR 5"
FT REPEAT 283..317
FT /note="PPR 6"
FT REPEAT 318..352
FT /note="PPR 7"
FT REPEAT 353..387
FT /note="PPR 8"
FT REPEAT 389..423
FT /note="PPR 9"
FT REPEAT 424..458
FT /note="PPR 10"
FT REPEAT 459..487
FT /note="PPR 11"
FT REPEAT 489..523
FT /note="PPR 12"
SQ SEQUENCE 540 AA; 62060 MW; F9E0FD73631546CE CRC64;
MGAVWLSHVS QLVCGCYLIE QSSCVLRTFH WSLSHSLNFT LTMKPKRRRL GVKMESFSLA
TPNMCFRKVS SELDSSFNGE NVVCGLELEE KTAGDRNRIH FLEERNEETL SKRLRKLSRL
DKVRSALELF DSMRFLGLQP NAHACNSFLS CLLRNGDIQK AFTVFEFMRK KENVTGHTYS
LMLKAVAEVK GCESALRMFR ELEREPKRRS CFDVVLYNTA ISLCGRINNV YETERIWRVM
KGDGHIGTEI TYSLLVSIFV RCGRSELALD VYDEMVNNKI SLREDAMYAM ISACTKEEKW
DLALKIFQSM LKKGMKPNLV ACNTLINSLG KAGKVGLVFK VYSVLKSLGH KPDEYTWNAL
LTALYKANRY EDVLQLFDMI RSENLCCLNE YLYNTAMVSC QKLGYWEKAV KLLYEMEGSG
LTVSTSSYNL VISACEKSRK SKVALLVYEH MAQRDCKPNT FTYLSLVRSC IWGSLWDEVE
DILKKVEPDV SLYNAAIHGM CLRREFKFAK ELYVKMREMG LEPDGKTRAM MLQNLKKHQK
