PP263_ARATH
ID PP263_ARATH Reviewed; 415 AA.
AC Q9M2A1; Q93WJ1;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 2.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g42630;
GN OrderedLocusNames=At3g42630; ORFNames=T12K4_80;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-415.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK55667.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB86446.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL138640; CAB86446.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE77742.1; -; Genomic_DNA.
DR EMBL; AF378864; AAK55667.1; ALT_INIT; mRNA.
DR EMBL; AY057743; AAL15373.1; -; mRNA.
DR PIR; T47321; T47321.
DR RefSeq; NP_566863.2; NM_114130.4.
DR AlphaFoldDB; Q9M2A1; -.
DR SMR; Q9M2A1; -.
DR BioGRID; 8605; 1.
DR IntAct; Q9M2A1; 1.
DR STRING; 3702.AT3G42630.1; -.
DR PaxDb; Q9M2A1; -.
DR PRIDE; Q9M2A1; -.
DR ProteomicsDB; 248953; -.
DR EnsemblPlants; AT3G42630.1; AT3G42630.1; AT3G42630.
DR GeneID; 823280; -.
DR Gramene; AT3G42630.1; AT3G42630.1; AT3G42630.
DR KEGG; ath:AT3G42630; -.
DR Araport; AT3G42630; -.
DR TAIR; locus:2096544; AT3G42630.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_783787_0_0_1; -.
DR InParanoid; Q9M2A1; -.
DR OMA; RSNQIFW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M2A1; -.
DR PRO; PR:Q9M2A1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M2A1; baseline and differential.
DR Genevisible; Q9M2A1; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..415
FT /note="Pentatricopeptide repeat-containing protein
FT At3g42630"
FT /id="PRO_0000356122"
FT REPEAT 46..80
FT /note="PPR 1"
FT REPEAT 81..115
FT /note="PPR 2"
FT REPEAT 116..150
FT /note="PPR 3"
FT REPEAT 151..185
FT /note="PPR 4"
FT REPEAT 186..220
FT /note="PPR 5"
FT REPEAT 221..255
FT /note="PPR 6"
FT REPEAT 256..290
FT /note="PPR 7"
FT REPEAT 291..325
FT /note="PPR 8"
FT REPEAT 326..360
FT /note="PPR 9"
SQ SEQUENCE 415 AA; 47722 MW; 6C58FBBD31ED54C6 CRC64;
MLSLNLSLKP QHLKLLSCYT DSSAPSIAKK LIKESKLSRD FSQKIQIVDY APLVQTLSQR
RLPDVAHEIF LQTKSVNLLP NYRTLCALML CFAENGFVLR ARTIWDEIIN SCFVPDVFVV
SKLISAYEQF GCFDEVAKIT KDVAARHSKL LPVVSSLAIS CFGKNGQLEL MEGVIEEMDS
KGVLLEAETA NVIVRYYSFF GSLDKMEKAY GRVKKFGIVI EEEEIRAVVL AYLKQRKFYR
LREFLSDVGL GRRNLGNMLW NSVLLSYAAD FKMKSLQREF IGMLDAGFSP DLTTFNIRAL
AFSRMALFWD LHLTLEHMRR LNIVPDLVTF GCVVDAYMDK RLARNLEFVY NRMNLDDSPL
VLTDPLAFEV LGKGDFHLSS EAVLEFSPRK NWTYRKLIGV YLKKKLRRDQ IFWNY
