PP265_ARATH
ID PP265_ARATH Reviewed; 657 AA.
AC Q9STF3;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g46790, chloroplastic;
DE AltName: Full=Protein CHLORORESPIRATORY REDUCTION 2;
DE Flags: Precursor;
GN Name=CRR2; Synonyms=PCMP-H54; OrderedLocusNames=At3g46790;
GN ORFNames=T6H20.180;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP FUNCTION.
RX PubMed=14617084; DOI=10.1046/j.1365-313x.2003.01900.x;
RA Hashimoto M., Endo T., Peltier G., Tasaka M., Shikanai T.;
RT "A nucleus-encoded factor, CRR2, is essential for the expression of
RT chloroplast ndhB in Arabidopsis.";
RL Plant J. 36:541-549(2003).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- FUNCTION: Required for the intergenic processing between chloroplast
CC rsp7 and ndhB transcripts. {ECO:0000269|PubMed:14617084}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL096859; CAB51186.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78205.1; -; Genomic_DNA.
DR EMBL; AK226825; BAE98921.1; -; mRNA.
DR PIR; T12969; T12969.
DR RefSeq; NP_190263.1; NM_114546.4.
DR AlphaFoldDB; Q9STF3; -.
DR SMR; Q9STF3; -.
DR BioGRID; 9152; 1.
DR STRING; 3702.AT3G46790.1; -.
DR PaxDb; Q9STF3; -.
DR PRIDE; Q9STF3; -.
DR ProteomicsDB; 249107; -.
DR EnsemblPlants; AT3G46790.1; AT3G46790.1; AT3G46790.
DR GeneID; 823832; -.
DR Gramene; AT3G46790.1; AT3G46790.1; AT3G46790.
DR KEGG; ath:AT3G46790; -.
DR Araport; AT3G46790; -.
DR TAIR; locus:2102852; AT3G46790.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9STF3; -.
DR OMA; SYGVHGY; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9STF3; -.
DR PRO; PR:Q9STF3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9STF3; baseline and differential.
DR Genevisible; Q9STF3; AT.
DR GO; GO:0009507; C:chloroplast; ISS:TAIR.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0031425; P:chloroplast RNA processing; IMP:TAIR.
DR GO; GO:0031426; P:polycistronic mRNA processing; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..51
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 52..657
FT /note="Pentatricopeptide repeat-containing protein
FT At3g46790, chloroplastic"
FT /id="PRO_0000356124"
FT REPEAT 45..75
FT /note="PPR 1"
FT REPEAT 76..110
FT /note="PPR 2"
FT REPEAT 111..141
FT /note="PPR 3"
FT REPEAT 142..176
FT /note="PPR 4"
FT REPEAT 177..215
FT /note="PPR 5"
FT REPEAT 216..246
FT /note="PPR 6"
FT REPEAT 247..277
FT /note="PPR 7"
FT REPEAT 284..318
FT /note="PPR 8"
FT REPEAT 319..349
FT /note="PPR 9"
FT REPEAT 350..384
FT /note="PPR 10"
FT REPEAT 385..420
FT /note="PPR 11"
FT REPEAT 421..451
FT /note="PPR 12"
FT REGION 456..531
FT /note="Type E motif"
FT REGION 532..562
FT /note="Type E(+) motif"
FT REGION 563..657
FT /note="Type DYW motif"
SQ SEQUENCE 657 AA; 74340 MW; 8257019E45CCDFC8 CRC64;
MFLSHPPQVI QPTYHTVNFL PRSPLKPPSC SVALNNPSIS SGAGAKISNN QLIQSLCKEG
KLKQAIRVLS QESSPSQQTY ELLILCCGHR SSLSDALRVH RHILDNGSDQ DPFLATKLIG
MYSDLGSVDY ARKVFDKTRK RTIYVWNALF RALTLAGHGE EVLGLYWKMN RIGVESDRFT
YTYVLKACVA SECTVNHLMK GKEIHAHLTR RGYSSHVYIM TTLVDMYARF GCVDYASYVF
GGMPVRNVVS WSAMIACYAK NGKAFEALRT FREMMRETKD SSPNSVTMVS VLQACASLAA
LEQGKLIHGY ILRRGLDSIL PVISALVTMY GRCGKLEVGQ RVFDRMHDRD VVSWNSLISS
YGVHGYGKKA IQIFEEMLAN GASPTPVTFV SVLGACSHEG LVEEGKRLFE TMWRDHGIKP
QIEHYACMVD LLGRANRLDE AAKMVQDMRT EPGPKVWGSL LGSCRIHGNV ELAERASRRL
FALEPKNAGN YVLLADIYAE AQMWDEVKRV KKLLEHRGLQ KLPGRCWMEV RRKMYSFVSV
DEFNPLMEQI HAFLVKLAED MKEKGYIPQT KGVLYELETE EKERIVLGHS EKLALAFGLI
NTSKGEPIRI TKNLRLCEDC HLFTKFISKF MEKEILVRDV NRFHRFKNGV CSCGDYW
