PP267_ARATH
ID PP267_ARATH Reviewed; 591 AA.
AC Q9SN85;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g47530;
GN Name=PCMP-H76; OrderedLocusNames=At3g47530; ORFNames=F1P2.80;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132955; CAB61979.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78293.1; -; Genomic_DNA.
DR EMBL; AK221462; BAD94558.1; -; mRNA.
DR PIR; T45713; T45713.
DR RefSeq; NP_190337.1; NM_114621.3.
DR AlphaFoldDB; Q9SN85; -.
DR SMR; Q9SN85; -.
DR PaxDb; Q9SN85; -.
DR PRIDE; Q9SN85; -.
DR ProteomicsDB; 249108; -.
DR EnsemblPlants; AT3G47530.1; AT3G47530.1; AT3G47530.
DR GeneID; 823907; -.
DR Gramene; AT3G47530.1; AT3G47530.1; AT3G47530.
DR KEGG; ath:AT3G47530; -.
DR Araport; AT3G47530; -.
DR TAIR; locus:2079187; AT3G47530.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9SN85; -.
DR OMA; PNVHHYG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SN85; -.
DR PRO; PR:Q9SN85; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SN85; baseline and differential.
DR Genevisible; Q9SN85; AT.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:1900865; P:chloroplast RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..591
FT /note="Pentatricopeptide repeat-containing protein
FT At3g47530"
FT /id="PRO_0000356126"
FT REPEAT 76..110
FT /note="PPR 1"
FT REPEAT 112..146
FT /note="PPR 2"
FT REPEAT 147..177
FT /note="PPR 3"
FT REPEAT 178..208
FT /note="PPR 4"
FT REPEAT 216..250
FT /note="PPR 5"
FT REPEAT 251..281
FT /note="PPR 6"
FT REPEAT 282..316
FT /note="PPR 7"
FT REPEAT 317..351
FT /note="PPR 8"
FT REPEAT 354..384
FT /note="PPR 9"
FT REGION 389..464
FT /note="Type E motif"
FT REGION 465..495
FT /note="Type E(+) motif"
FT REGION 496..591
FT /note="Type DYW motif"
SQ SEQUENCE 591 AA; 66326 MW; CCF9D560806E20B0 CRC64;
MLKSISSSSG DDHLLSLIVS STGKLHLRQI HALLLRTSLI RNSDVFHHFL SRLALSLIPR
DINYSCRVFS QRLNPTLSHC NTMIRAFSLS QTPCEGFRLF RSLRRNSSLP ANPLSSSFAL
KCCIKSGDLL GGLQIHGKIF SDGFLSDSLL MTTLMDLYST CENSTDACKV FDEIPKRDTV
SWNVLFSCYL RNKRTRDVLV LFDKMKNDVD GCVKPDGVTC LLALQACANL GALDFGKQVH
DFIDENGLSG ALNLSNTLVS MYSRCGSMDK AYQVFYGMRE RNVVSWTALI SGLAMNGFGK
EAIEAFNEML KFGISPEEQT LTGLLSACSH SGLVAEGMMF FDRMRSGEFK IKPNLHHYGC
VVDLLGRARL LDKAYSLIKS MEMKPDSTIW RTLLGACRVH GDVELGERVI SHLIELKAEE
AGDYVLLLNT YSTVGKWEKV TELRSLMKEK RIHTKPGCSA IELQGTVHEF IVDDVSHPRK
EEIYKMLAEI NQQLKIAGYV AEITSELHNL ESEEEKGYAL RYHSEKLAIA FGILVTPPGT
TIRVTKNLRT CVDCHNFAKF VSDVYDRIVI VRDRSRFHHF KGGSCSCNDF W
