PP268_ARATH
ID PP268_ARATH Reviewed; 706 AA.
AC Q9STS9;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g47840;
GN Name=PCMP-E43; OrderedLocusNames=At3g47840; ORFNames=T23J7.170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL049746; CAB41867.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78339.1; -; Genomic_DNA.
DR PIR; T07723; T07723.
DR RefSeq; NP_190368.1; NM_114654.2.
DR AlphaFoldDB; Q9STS9; -.
DR SMR; Q9STS9; -.
DR STRING; 3702.AT3G47840.1; -.
DR PaxDb; Q9STS9; -.
DR PRIDE; Q9STS9; -.
DR EnsemblPlants; AT3G47840.1; AT3G47840.1; AT3G47840.
DR GeneID; 823940; -.
DR Gramene; AT3G47840.1; AT3G47840.1; AT3G47840.
DR KEGG; ath:AT3G47840; -.
DR Araport; AT3G47840; -.
DR TAIR; locus:2100392; AT3G47840.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9STS9; -.
DR OMA; EWGEQLH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9STS9; -.
DR PRO; PR:Q9STS9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9STS9; baseline and differential.
DR Genevisible; Q9STS9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 17.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..706
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g47840"
FT /id="PRO_0000356127"
FT REPEAT 39..69
FT /note="PPR 1"
FT REPEAT 70..104
FT /note="PPR 2"
FT REPEAT 107..141
FT /note="PPR 3"
FT REPEAT 142..172
FT /note="PPR 4"
FT REPEAT 173..203
FT /note="PPR 5"
FT REPEAT 208..242
FT /note="PPR 6"
FT REPEAT 243..273
FT /note="PPR 7"
FT REPEAT 274..308
FT /note="PPR 8"
FT REPEAT 309..343
FT /note="PPR 9"
FT REPEAT 344..374
FT /note="PPR 10"
FT REPEAT 375..409
FT /note="PPR 11"
FT REPEAT 410..444
FT /note="PPR 12"
FT REPEAT 445..475
FT /note="PPR 13"
FT REPEAT 476..510
FT /note="PPR 14"
FT REPEAT 511..541
FT /note="PPR 15"
FT REPEAT 547..577
FT /note="PPR 16"
FT REGION 582..657
FT /note="Type E motif"
FT REGION 658..688
FT /note="Type E(+) motif"
SQ SEQUENCE 706 AA; 78054 MW; 71D465749D10CEA4 CRC64;
MISSVRNCGT IQRFCTTSIS LLQKPVEENI VRISNQVMVK FDPNSHLRSL INAGNLRAAR
QVFDKMPHGD IVSWTSIIKR YVTANNSDEA LILFSAMRVV DHAVSPDTSV LSVVLKACGQ
SSNIAYGESL HAYAVKTSLL SSVYVGSSLL DMYKRVGKID KSCRVFSEMP FRNAVTWTAI
ITGLVHAGRY KEGLTYFSEM SRSEELSDTY TFAIALKACA GLRQVKYGKA IHTHVIVRGF
VTTLCVANSL ATMYTECGEM QDGLCLFENM SERDVVSWTS LIVAYKRIGQ EVKAVETFIK
MRNSQVPPNE QTFASMFSAC ASLSRLVWGE QLHCNVLSLG LNDSLSVSNS MMKMYSTCGN
LVSASVLFQG MRCRDIISWS TIIGGYCQAG FGEEGFKYFS WMRQSGTKPT DFALASLLSV
SGNMAVIEGG RQVHALALCF GLEQNSTVRS SLINMYSKCG SIKEASMIFG ETDRDDIVSL
TAMINGYAEH GKSKEAIDLF EKSLKVGFRP DSVTFISVLT ACTHSGQLDL GFHYFNMMQE
TYNMRPAKEH YGCMVDLLCR AGRLSDAEKM INEMSWKKDD VVWTTLLIAC KAKGDIERGR
RAAERILELD PTCATALVTL ANIYSSTGNL EEAANVRKNM KAKGVIKEPG WSSIKIKDCV
SAFVSGDRFH PQSEDIYNIL ELAVSGAEAH RFDCTLKRAF GVNLYS
