PP269_ARATH
ID PP269_ARATH Reviewed; 621 AA.
AC Q9STK5;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g48250, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At3g48250; ORFNames=T29H11_230;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL049659; CAB41173.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78391.1; -; Genomic_DNA.
DR PIR; T06717; T06717.
DR RefSeq; NP_190408.1; NM_114695.2.
DR AlphaFoldDB; Q9STK5; -.
DR SMR; Q9STK5; -.
DR STRING; 3702.AT3G48250.1; -.
DR PaxDb; Q9STK5; -.
DR PRIDE; Q9STK5; -.
DR ProteomicsDB; 249110; -.
DR EnsemblPlants; AT3G48250.1; AT3G48250.1; AT3G48250.
DR GeneID; 823983; -.
DR Gramene; AT3G48250.1; AT3G48250.1; AT3G48250.
DR KEGG; ath:AT3G48250; -.
DR Araport; AT3G48250; -.
DR TAIR; locus:2101190; AT3G48250.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_022294_0_0_1; -.
DR InParanoid; Q9STK5; -.
DR OMA; EGHQPDN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9STK5; -.
DR PRO; PR:Q9STK5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9STK5; baseline and differential.
DR Genevisible; Q9STK5; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0008380; P:RNA splicing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR044578; BIR6-like.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR47003; PTHR47003; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..67
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 68..621
FT /note="Pentatricopeptide repeat-containing protein
FT At3g48250, chloroplastic"
FT /id="PRO_0000356128"
FT REPEAT 122..156
FT /note="PPR 1"
FT REPEAT 157..194
FT /note="PPR 2"
FT REPEAT 262..296
FT /note="PPR 3"
FT REPEAT 297..331
FT /note="PPR 4"
FT REPEAT 332..368
FT /note="PPR 5"
FT REPEAT 369..403
FT /note="PPR 6"
FT REPEAT 404..438
FT /note="PPR 7"
FT REPEAT 439..473
FT /note="PPR 8"
FT REPEAT 474..509
FT /note="PPR 9"
FT REPEAT 510..544
FT /note="PPR 10"
SQ SEQUENCE 621 AA; 71033 MW; C787310F87B8C0AC CRC64;
MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP
DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE KYPEKAYYFL DWVLRDSGLS
PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV
AHFYERMLKE NAMSVVAGEV SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP
LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK
YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG YEPDNITYSQ LVFGLCKAKR
LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV
LIDGFVIHNK FEGASIFLME MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ
NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
FICPHHFKTH PKISELFGAA A
