PP271_ARATH
ID PP271_ARATH Reviewed; 686 AA.
AC P0C899; Q9SMV0;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 1.
DT 25-MAY-2022, entry version 84.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g49142;
GN Name=PCMP-H77; OrderedLocusNames=At3g49142; ORFNames=F2K15.2, T2J13.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB61996.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At3g49140 and At3g49142.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132956; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL132967; CAB61996.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE78504.1; -; Genomic_DNA.
DR PIR; T46116; T46116.
DR RefSeq; NP_001190038.1; NM_001203109.2.
DR AlphaFoldDB; P0C899; -.
DR SMR; P0C899; -.
DR PaxDb; P0C899; -.
DR PRIDE; P0C899; -.
DR ProteomicsDB; 249193; -.
DR EnsemblPlants; AT3G49142.1; AT3G49142.1; AT3G49142.
DR GeneID; 10723034; -.
DR Gramene; AT3G49142.1; AT3G49142.1; AT3G49142.
DR KEGG; ath:AT3G49142; -.
DR Araport; AT3G49142; -.
DR TAIR; locus:6530298202; AT3G49142.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; P0C899; -.
DR OMA; FFNVMIR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; P0C899; -.
DR PRO; PR:P0C899; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; P0C899; baseline and differential.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..686
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g49142"
FT /id="PRO_0000356130"
FT REPEAT 73..103
FT /note="PPR 1"
FT REPEAT 104..138
FT /note="PPR 2"
FT REPEAT 139..173
FT /note="PPR 3"
FT REPEAT 174..204
FT /note="PPR 4"
FT REPEAT 205..239
FT /note="PPR 5"
FT REPEAT 240..272
FT /note="PPR 6"
FT REPEAT 273..307
FT /note="PPR 7"
FT REPEAT 308..342
FT /note="PPR 8"
FT REPEAT 343..373
FT /note="PPR 9"
FT REPEAT 374..408
FT /note="PPR 10"
FT REPEAT 409..439
FT /note="PPR 11"
FT REPEAT 445..475
FT /note="PPR 12"
FT REGION 480..555
FT /note="Type E motif"
FT REGION 556..586
FT /note="Type E(+) motif"
FT REGION 587..686
FT /note="Type DYW motif"
SQ SEQUENCE 686 AA; 76736 MW; 640EDDF64BA424F7 CRC64;
MKRINVDLHL LHFPKFRKFQ SRKVSSSLPK LELDQKSPQE TVFLLGQVLD TYPDIRTLRT
VHSRIILEDL RCNSSLGVKL MRAYASLKDV ASARKVFDEI PERNVIIINV MIRSYVNNGF
YGEGVKVFGT MCGCNVRPDH YTFPCVLKAC SCSGTIVIGR KIHGSATKVG LSSTLFVGNG
LVSMYGKCGF LSEARLVLDE MSRRDVVSWN SLVVGYAQNQ RFDDALEVCR EMESVKISHD
AGTMASLLPA VSNTTTENVM YVKDMFFKMG KKSLVSWNVM IGVYMKNAMP VEAVELYSRM
EADGFEPDAV SITSVLPACG DTSALSLGKK IHGYIERKKL IPNLLLENAL IDMYAKCGCL
EKARDVFENM KSRDVVSWTA MISAYGFSGR GCDAVALFSK LQDSGLVPDS IAFVTTLAAC
SHAGLLEEGR SCFKLMTDHY KITPRLEHLA CMVDLLGRAG KVKEAYRFIQ DMSMEPNERV
WGALLGACRV HSDTDIGLLA ADKLFQLAPE QSGYYVLLSN IYAKAGRWEE VTNIRNIMKS
KGLKKNPGAS NVEVNRIIHT FLVGDRSHPQ SDEIYRELDV LVKKMKELGY VPDSESALHD
VEEEDKETHL AVHSEKLAIV FALMNTKEEE EDSNNTIRIT KNLRICGDCH VAAKLISQIT
SREIIIRDTN RFHVFRFGVC SCGDYW
