PP274_ARATH
ID PP274_ARATH Reviewed; 721 AA.
AC Q9M2Y7;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g49710;
GN Name=PCMP-H79; OrderedLocusNames=At3g49710; ORFNames=T16K5.60;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132965; CAB66909.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78579.1; -; Genomic_DNA.
DR PIR; T46037; T46037.
DR RefSeq; NP_190540.1; NM_114831.1.
DR AlphaFoldDB; Q9M2Y7; -.
DR SMR; Q9M2Y7; -.
DR STRING; 3702.AT3G49710.1; -.
DR PaxDb; Q9M2Y7; -.
DR PRIDE; Q9M2Y7; -.
DR ProteomicsDB; 248957; -.
DR EnsemblPlants; AT3G49710.1; AT3G49710.1; AT3G49710.
DR GeneID; 824133; -.
DR Gramene; AT3G49710.1; AT3G49710.1; AT3G49710.
DR KEGG; ath:AT3G49710; -.
DR Araport; AT3G49710; -.
DR TAIR; locus:2097365; AT3G49710.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9M2Y7; -.
DR OMA; MGFHENP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M2Y7; -.
DR PRO; PR:Q9M2Y7; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M2Y7; baseline and differential.
DR Genevisible; Q9M2Y7; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..721
FT /note="Pentatricopeptide repeat-containing protein
FT At3g49710"
FT /id="PRO_0000356133"
FT REPEAT 42..72
FT /note="PPR 1"
FT REPEAT 73..103
FT /note="PPR 2"
FT REPEAT 104..138
FT /note="PPR 3"
FT REPEAT 139..169
FT /note="PPR 4"
FT REPEAT 172..202
FT /note="PPR 5"
FT REPEAT 204..238
FT /note="PPR 6"
FT REPEAT 239..273
FT /note="PPR 7"
FT REPEAT 274..307
FT /note="PPR 8"
FT REPEAT 308..343
FT /note="PPR 9"
FT REPEAT 344..378
FT /note="PPR 10"
FT REPEAT 380..410
FT /note="PPR 11"
FT REPEAT 411..445
FT /note="PPR 12"
FT REPEAT 446..476
FT /note="PPR 13"
FT REPEAT 482..512
FT /note="PPR 14"
FT REGION 517..592
FT /note="Type E motif"
FT REGION 593..623
FT /note="Type E(+) motif"
FT REGION 624..721
FT /note="Type DYW motif"
SQ SEQUENCE 721 AA; 81340 MW; FF0DE27F475D8106 CRC64;
MNQTPWKFKT FRDLLLKSVA ERDLFTGKSL HALYVKSIVA SSTYLSNHFV NLYSKCGRLS
YARAAFYSTE EPNVFSYNVI VKAYAKDSKI HIARQLFDEI PQPDTVSYNT LISGYADARE
TFAAMVLFKR MRKLGFEVDG FTLSGLIAAC CDRVDLIKQL HCFSVSGGFD SYSSVNNAFV
TYYSKGGLLR EAVSVFYGMD ELRDEVSWNS MIVAYGQHKE GAKALALYKE MIFKGFKIDM
FTLASVLNAL TSLDHLIGGR QFHGKLIKAG FHQNSHVGSG LIDFYSKCGG CDGMYDSEKV
FQEILSPDLV VWNTMISGYS MNEELSEEAV KSFRQMQRIG HRPDDCSFVC VTSACSNLSS
PSQCKQIHGL AIKSHIPSNR ISVNNALISL YYKSGNLQDA RWVFDRMPEL NAVSFNCMIK
GYAQHGHGTE ALLLYQRMLD SGIAPNKITF VAVLSACAHC GKVDEGQEYF NTMKETFKIE
PEAEHYSCMI DLLGRAGKLE EAERFIDAMP YKPGSVAWAA LLGACRKHKN MALAERAANE
LMVMQPLAAT PYVMLANMYA DARKWEEMAS VRKSMRGKRI RKKPGCSWIE VKKKKHVFVA
EDWSHPMIRE VNEYLEEMMK KMKKVGYVMD KKWAMVKEDE AGEGDEEMRL GHHSEKLAVA
FGLMSTRDGE ELVVVKNLRI CGDCHNAIKF MSAVAGREII VRDNLRFHCF KDGKCSCGDY
W
