PP276_ARATH
ID PP276_ARATH Reviewed; 737 AA.
AC Q9M2Y4;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g49740;
GN Name=PCMP-E84; OrderedLocusNames=At3g49740; ORFNames=T16K5.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132965; CAB66912.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78584.1; -; Genomic_DNA.
DR PIR; T46040; T46040.
DR RefSeq; NP_190543.1; NM_114834.3.
DR AlphaFoldDB; Q9M2Y4; -.
DR SMR; Q9M2Y4; -.
DR PaxDb; Q9M2Y4; -.
DR PRIDE; Q9M2Y4; -.
DR EnsemblPlants; AT3G49740.1; AT3G49740.1; AT3G49740.
DR GeneID; 824136; -.
DR Gramene; AT3G49740.1; AT3G49740.1; AT3G49740.
DR KEGG; ath:AT3G49740; -.
DR Araport; AT3G49740; -.
DR TAIR; locus:2097410; AT3G49740.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9M2Y4; -.
DR OMA; SCAAYGN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M2Y4; -.
DR PRO; PR:Q9M2Y4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M2Y4; differential.
DR Genevisible; Q9M2Y4; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..737
FT /note="Pentatricopeptide repeat-containing protein
FT At3g49740"
FT /id="PRO_0000356135"
FT REPEAT 20..55
FT /note="PPR 1"
FT REPEAT 56..90
FT /note="PPR 2"
FT REPEAT 91..121
FT /note="PPR 3"
FT REPEAT 122..152
FT /note="PPR 4"
FT REPEAT 154..188
FT /note="PPR 5"
FT REPEAT 189..222
FT /note="PPR 6"
FT REPEAT 223..253
FT /note="PPR 7"
FT REPEAT 256..289
FT /note="PPR 8"
FT REPEAT 290..321
FT /note="PPR 9"
FT REPEAT 322..352
FT /note="PPR 10"
FT REPEAT 353..387
FT /note="PPR 11"
FT REPEAT 388..418
FT /note="PPR 12"
FT REPEAT 420..454
FT /note="PPR 13"
FT REPEAT 455..485
FT /note="PPR 14"
FT REPEAT 488..522
FT /note="PPR 15"
FT REPEAT 523..553
FT /note="PPR 16"
FT REPEAT 554..588
FT /note="PPR 17"
FT REPEAT 590..620
FT /note="PPR 18"
FT REPEAT 626..656
FT /note="PPR 19"
FT REGION 663..737
FT /note="Type E motif; degenerate"
SQ SEQUENCE 737 AA; 82013 MW; AA03AB1F03B17454 CRC64;
MRKALCLTES LSAIAENSTT LLNLNRRLTG LTRSGENRNA LKLFADVHRC TTLRPDQYSV
SLAITTARHL RDTIFGGQVH CYAIRSGLLC HSHVSNTLLS LYERLGNLAS LKKKFDEIDE
PDVYSWTTLL SASFKLGDIE YAFEVFDKMP ERDDVAIWNA MITGCKESGY HETSVELFRE
MHKLGVRHDK FGFATILSMC DYGSLDFGKQ VHSLVIKAGF FIASSVVNAL ITMYFNCQVV
VDACLVFEET DVAVRDQVTF NVVIDGLAGF KRDESLLVFR KMLEASLRPT DLTFVSVMGS
CSCAAMGHQV HGLAIKTGYE KYTLVSNATM TMYSSFEDFG AAHKVFESLE EKDLVTWNTM
ISSYNQAKLG KSAMSVYKRM HIIGVKPDEF TFGSLLATSL DLDVLEMVQA CIIKFGLSSK
IEISNALISA YSKNGQIEKA DLLFERSLRK NLISWNAIIS GFYHNGFPFE GLERFSCLLE
SEVRILPDAY TLSTLLSICV STSSLMLGSQ THAYVLRHGQ FKETLIGNAL INMYSQCGTI
QNSLEVFNQM SEKDVVSWNS LISAYSRHGE GENAVNTYKT MQDEGKVIPD AATFSAVLSA
CSHAGLVEEG LEIFNSMVEF HGVIRNVDHF SCLVDLLGRA GHLDEAESLV KISEKTIGSR
VDVWWALFSA CAAHGDLKLG KMVAKLLMEK EKDDPSVYVQ LSNIYAGAGM WKEAEETRRA
INMIGAMKQR GCSWMRL
