PP280_ARATH
ID PP280_ARATH Reviewed; 768 AA.
AC Q9LFI1;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g53360, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E86; OrderedLocusNames=At3g53360; ORFNames=F4P12_60;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132966; CAB67643.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79075.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65695.1; -; Genomic_DNA.
DR PIR; T45876; T45876.
DR RefSeq; NP_001319736.1; NM_001339618.1.
DR RefSeq; NP_190904.1; NM_115196.2.
DR AlphaFoldDB; Q9LFI1; -.
DR SMR; Q9LFI1; -.
DR iPTMnet; Q9LFI1; -.
DR PaxDb; Q9LFI1; -.
DR PRIDE; Q9LFI1; -.
DR ProteomicsDB; 248961; -.
DR EnsemblPlants; AT3G53360.1; AT3G53360.1; AT3G53360.
DR EnsemblPlants; AT3G53360.2; AT3G53360.2; AT3G53360.
DR GeneID; 824504; -.
DR Gramene; AT3G53360.1; AT3G53360.1; AT3G53360.
DR Gramene; AT3G53360.2; AT3G53360.2; AT3G53360.
DR KEGG; ath:AT3G53360; -.
DR Araport; AT3G53360; -.
DR TAIR; locus:2083961; AT3G53360.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; Q9LFI1; -.
DR OMA; ELGYFEM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LFI1; -.
DR PRO; PR:Q9LFI1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LFI1; baseline and differential.
DR Genevisible; Q9LFI1; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 3.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 18.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..70
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 71..768
FT /note="Pentatricopeptide repeat-containing protein
FT At3g53360, mitochondrial"
FT /id="PRO_0000356139"
FT REPEAT 30..60
FT /note="PPR 1"
FT REPEAT 66..100
FT /note="PPR 2"
FT REPEAT 101..131
FT /note="PPR 3"
FT REPEAT 132..166
FT /note="PPR 4"
FT REPEAT 167..201
FT /note="PPR 5"
FT REPEAT 202..232
FT /note="PPR 6"
FT REPEAT 233..267
FT /note="PPR 7"
FT REPEAT 269..303
FT /note="PPR 8"
FT REPEAT 304..334
FT /note="PPR 9"
FT REPEAT 335..369
FT /note="PPR 10"
FT REPEAT 370..404
FT /note="PPR 11"
FT REPEAT 405..435
FT /note="PPR 12"
FT REPEAT 437..471
FT /note="PPR 13"
FT REPEAT 472..506
FT /note="PPR 14"
FT REPEAT 507..537
FT /note="PPR 15"
FT REPEAT 538..572
FT /note="PPR 16"
FT REPEAT 573..608
FT /note="PPR 17"
FT REPEAT 609..639
FT /note="PPR 18"
FT REGION 644..719
FT /note="Type E motif"
FT REGION 720..750
FT /note="Type E(+) motif"
SQ SEQUENCE 768 AA; 85674 MW; 5A9060E614B44EE9 CRC64;
MATMLRLGAR VSVSNSQILA TSSVVSTIKT EELMNDHINS LCKSNFYREA LEAFDFAQKN
SSFKIRLRTY ISLICACSSS RSLAQGRKIH DHILNSNCKY DTILNNHILS MYGKCGSLRD
AREVFDFMPE RNLVSYTSVI TGYSQNGQGA EAIRLYLKML QEDLVPDQFA FGSIIKACAS
SSDVGLGKQL HAQVIKLESS SHLIAQNALI AMYVRFNQMS DASRVFYGIP MKDLISWSSI
IAGFSQLGFE FEALSHLKEM LSFGVFHPNE YIFGSSLKAC SSLLRPDYGS QIHGLCIKSE
LAGNAIAGCS LCDMYARCGF LNSARRVFDQ IERPDTASWN VIIAGLANNG YADEAVSVFS
QMRSSGFIPD AISLRSLLCA QTKPMALSQG MQIHSYIIKW GFLADLTVCN SLLTMYTFCS
DLYCCFNLFE DFRNNADSVS WNTILTACLQ HEQPVEMLRL FKLMLVSECE PDHITMGNLL
RGCVEISSLK LGSQVHCYSL KTGLAPEQFI KNGLIDMYAK CGSLGQARRI FDSMDNRDVV
SWSTLIVGYA QSGFGEEALI LFKEMKSAGI EPNHVTFVGV LTACSHVGLV EEGLKLYATM
QTEHGISPTK EHCSCVVDLL ARAGRLNEAE RFIDEMKLEP DVVVWKTLLS ACKTQGNVHL
AQKAAENILK IDPFNSTAHV LLCSMHASSG NWENAALLRS SMKKHDVKKI PGQSWIEIED
KIHIFFAEDI FHPERDDIYT VLHNIWSQML DECNPQHKKR LQFIHETG
