PP281_ARATH
ID PP281_ARATH Reviewed; 754 AA.
AC Q9LFF1;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g53700, chloroplastic;
DE AltName: Full=Protein MATERNAL EFFECT EMBRYO ARREST 40;
DE Flags: Precursor;
GN Name=MEE40; OrderedLocusNames=At3g53700; ORFNames=F4P12_400, F5K20.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP FUNCTION.
RX PubMed=15634699; DOI=10.1242/dev.01595;
RA Pagnussat G.C., Yu H.-J., Ngo Q.A., Rajani S., Mayalagu S., Johnson C.S.,
RA Capron A., Xie L.-F., Ye D., Sundaresan V.;
RT "Genetic and molecular identification of genes required for female
RT gametophyte development and function in Arabidopsis.";
RL Development 132:603-614(2005).
CC -!- FUNCTION: May be involved in female gametophyte development.
CC {ECO:0000269|PubMed:15634699}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL132960; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL132966; CAB67677.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79129.1; -; Genomic_DNA.
DR EMBL; AY057573; AAL09812.1; -; mRNA.
DR PIR; T45910; T45910.
DR RefSeq; NP_190938.1; NM_115230.3.
DR AlphaFoldDB; Q9LFF1; -.
DR SMR; Q9LFF1; -.
DR STRING; 3702.AT3G53700.1; -.
DR PaxDb; Q9LFF1; -.
DR PRIDE; Q9LFF1; -.
DR ProteomicsDB; 248962; -.
DR EnsemblPlants; AT3G53700.1; AT3G53700.1; AT3G53700.
DR GeneID; 824537; -.
DR Gramene; AT3G53700.1; AT3G53700.1; AT3G53700.
DR KEGG; ath:AT3G53700; -.
DR Araport; AT3G53700; -.
DR TAIR; locus:2083976; AT3G53700.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9LFF1; -.
DR OMA; TIMQGFI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LFF1; -.
DR PRO; PR:Q9LFF1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LFF1; baseline and differential.
DR Genevisible; Q9LFF1; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13041; PPR_2; 7.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..72
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 73..754
FT /note="Pentatricopeptide repeat-containing protein
FT At3g53700, chloroplastic"
FT /id="PRO_0000356140"
FT REPEAT 82..116
FT /note="PPR 1"
FT REPEAT 117..152
FT /note="PPR 2"
FT REPEAT 153..187
FT /note="PPR 3"
FT REPEAT 188..222
FT /note="PPR 4"
FT REPEAT 223..257
FT /note="PPR 5"
FT REPEAT 258..288
FT /note="PPR 6"
FT REPEAT 294..328
FT /note="PPR 7"
FT REPEAT 329..363
FT /note="PPR 8"
FT REPEAT 364..398
FT /note="PPR 9"
FT REPEAT 399..433
FT /note="PPR 10"
FT REPEAT 434..468
FT /note="PPR 11"
FT REPEAT 469..503
FT /note="PPR 12"
FT REPEAT 504..538
FT /note="PPR 13"
FT REPEAT 539..573
FT /note="PPR 14"
FT REPEAT 574..608
FT /note="PPR 15"
FT REPEAT 609..643
FT /note="PPR 16"
FT REPEAT 645..680
FT /note="PPR 17"
SQ SEQUENCE 754 AA; 84551 MW; 5440BDF67BF4D1F2 CRC64;
MAFSSCLKFY PFSISQAVTL THHSFSLNLT PPSSTISFAS PHSAALSSTD VKLLDSLRSQ
PDDSAALRLF NLASKKPNFS PEPALYEEIL LRLGRSGSFD DMKKILEDMK SSRCEMGTST
FLILIESYAQ FELQDEILSV VDWMIDEFGL KPDTHFYNRM LNLLVDGNSL KLVEISHAKM
SVWGIKPDVS TFNVLIKALC RAHQLRPAIL MLEDMPSYGL VPDEKTFTTV MQGYIEEGDL
DGALRIREQM VEFGCSWSNV SVNVIVHGFC KEGRVEDALN FIQEMSNQDG FFPDQYTFNT
LVNGLCKAGH VKHAIEIMDV MLQEGYDPDV YTYNSVISGL CKLGEVKEAV EVLDQMITRD
CSPNTVTYNT LISTLCKENQ VEEATELARV LTSKGILPDV CTFNSLIQGL CLTRNHRVAM
ELFEEMRSKG CEPDEFTYNM LIDSLCSKGK LDEALNMLKQ MELSGCARSV ITYNTLIDGF
CKANKTREAE EIFDEMEVHG VSRNSVTYNT LIDGLCKSRR VEDAAQLMDQ MIMEGQKPDK
YTYNSLLTHF CRGGDIKKAA DIVQAMTSNG CEPDIVTYGT LISGLCKAGR VEVASKLLRS
IQMKGINLTP HAYNPVIQGL FRKRKTTEAI NLFREMLEQN EAPPDAVSYR IVFRGLCNGG
GPIREAVDFL VELLEKGFVP EFSSLYMLAE GLLTLSMEET LVKLVNMVMQ KARFSEEEVS
MVKGLLKIRK FQDALATLGG VLDSRQPRRT YRSR
