PP282_ARATH
ID PP282_ARATH Reviewed; 851 AA.
AC Q9SV46;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At3g54980, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At3g54980; ORFNames=F28P10.40, T15C9.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP CYS-26.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL049655; CAB41086.1; -; Genomic_DNA.
DR EMBL; AL132970; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002686; AEE79322.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63798.1; -; Genomic_DNA.
DR EMBL; BT003973; AAO42016.1; -; mRNA.
DR PIR; T06722; T06722.
DR RefSeq; NP_001325869.1; NM_001339711.1.
DR RefSeq; NP_191058.1; NM_115355.3.
DR AlphaFoldDB; Q9SV46; -.
DR SMR; Q9SV46; -.
DR STRING; 3702.AT3G54980.1; -.
DR PaxDb; Q9SV46; -.
DR PRIDE; Q9SV46; -.
DR ProteomicsDB; 249114; -.
DR EnsemblPlants; AT3G54980.1; AT3G54980.1; AT3G54980.
DR EnsemblPlants; AT3G54980.2; AT3G54980.2; AT3G54980.
DR GeneID; 824663; -.
DR Gramene; AT3G54980.1; AT3G54980.1; AT3G54980.
DR Gramene; AT3G54980.2; AT3G54980.2; AT3G54980.
DR KEGG; ath:AT3G54980; -.
DR Araport; AT3G54980; -.
DR TAIR; locus:2082727; AT3G54980.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SV46; -.
DR OMA; CNDYTYN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SV46; -.
DR PRO; PR:Q9SV46; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SV46; baseline and differential.
DR Genevisible; Q9SV46; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 8.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 19.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..26
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 27..851
FT /note="Pentatricopeptide repeat-containing protein
FT At3g54980, mitochondrial"
FT /id="PRO_0000356141"
FT REPEAT 162..196
FT /note="PPR 1"
FT REPEAT 197..231
FT /note="PPR 2"
FT REPEAT 232..266
FT /note="PPR 3"
FT REPEAT 267..301
FT /note="PPR 4"
FT REPEAT 303..337
FT /note="PPR 5"
FT REPEAT 338..372
FT /note="PPR 6"
FT REPEAT 373..407
FT /note="PPR 7"
FT REPEAT 408..438
FT /note="PPR 8"
FT REPEAT 442..476
FT /note="PPR 9"
FT REPEAT 477..511
FT /note="PPR 10"
FT REPEAT 512..546
FT /note="PPR 11"
FT REPEAT 547..577
FT /note="PPR 12"
FT REPEAT 583..617
FT /note="PPR 13"
FT REPEAT 618..652
FT /note="PPR 14"
FT REPEAT 653..687
FT /note="PPR 15"
FT REPEAT 688..722
FT /note="PPR 16"
FT REPEAT 723..757
FT /note="PPR 17"
FT REPEAT 758..792
FT /note="PPR 18"
FT REPEAT 793..827
FT /note="PPR 19"
SQ SEQUENCE 851 AA; 95060 MW; B2964BB93737BDC5 CRC64;
MRSLLVFRKI PSRIRLRNLR NNKPFCSQSQ FPKESENPSQ EQRLLVYGST SEENPVTSKV
SLLSAKPEQK DDASVIDVLL NRRNNPEAAL RFYNWARPWR GSFEDGDVFW VLIHILVSSP
ETYGRASDLL IRYVSTSNPT PMASVLVSKL VDSAKSFGFE VNSRAFNYLL NAYSKDRQTD
HAVDIVNQML ELDVIPFFPY VNRTLSALVQ RNSLTEAKEL YSRMVAIGVD GDNVTTQLLM
RASLREEKPA EALEVLSRAI ERGAEPDSLL YSLAVQACCK TLDLAMANSL LREMKEKKLC
VPSQETYTSV ILASVKQGNM DDAIRLKDEM LSDGISMNVV AATSLITGHC KNNDLVSALV
LFDKMEKEGP SPNSVTFSVL IEWFRKNGEM EKALEFYKKM EVLGLTPSVF HVHTIIQGWL
KGQKHEEALK LFDESFETGL ANVFVCNTIL SWLCKQGKTD EATELLSKME SRGIGPNVVS
YNNVMLGHCR QKNMDLARIV FSNILEKGLK PNNYTYSILI DGCFRNHDEQ NALEVVNHMT
SSNIEVNGVV YQTIINGLCK VGQTSKAREL LANMIEEKRL CVSCMSYNSI IDGFFKEGEM
DSAVAAYEEM CGNGISPNVI TYTSLMNGLC KNNRMDQALE MRDEMKNKGV KLDIPAYGAL
IDGFCKRSNM ESASALFSEL LEEGLNPSQP IYNSLISGFR NLGNMVAALD LYKKMLKDGL
RCDLGTYTTL IDGLLKDGNL ILASELYTEM QAVGLVPDEI IYTVIVNGLS KKGQFVKVVK
MFEEMKKNNV TPNVLIYNAV IAGHYREGNL DEAFRLHDEM LDKGILPDGA TFDILVSGQV
GNLQPVRAAS L
